Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV04_RS14510 Genome accession   NZ_AP024893
Coordinates   3138494..3139609 (-) Length   371 a.a.
NCBI ID   WP_171138786.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3133494..3144609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS14480 hemF 3134019..3134933 (-) 915 WP_171138782.1 oxygen-dependent coproporphyrinogen oxidase -
  OCV04_RS14485 - 3134969..3135526 (-) 558 WP_171138783.1 L-threonylcarbamoyladenylate synthase -
  OCV04_RS14490 purE 3135763..3136248 (+) 486 WP_102942830.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV04_RS14495 - 3136252..3137385 (+) 1134 WP_171138784.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV04_RS14500 - 3137436..3137999 (-) 564 WP_171138785.1 type I DNA topoisomerase -
  OCV04_RS14505 - 3138015..3138491 (-) 477 WP_042489417.1 DUF494 family protein -
  OCV04_RS14510 dprA 3138494..3139609 (-) 1116 WP_171138786.1 DNA-processing protein DprA Machinery gene
  OCV04_RS14515 - 3139622..3140719 (-) 1098 WP_171138787.1 LysM peptidoglycan-binding domain-containing protein -
  OCV04_RS14520 def 3140858..3141370 (+) 513 WP_042489422.1 peptide deformylase -
  OCV04_RS14525 fmt 3141387..3142334 (+) 948 WP_171138789.1 methionyl-tRNA formyltransferase -
  OCV04_RS14530 rsmB 3142455..3143735 (+) 1281 WP_102964105.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40682.42 Da        Isoelectric Point: 6.1769

>NTDB_id=89234 OCV04_RS14510 WP_171138786.1 3138494..3139609(-) (dprA) [Vibrio plantisponsor strain CECT 7581]
MNERDLSAWLALSFTPKLSKKSVKQLLSRDSLFNLFSYSASQWQAVGLASDQIHYLMHDAEREVEESLEWLKAQTGRHII
TPFCDSYPALLQQISSKPDVLFVEGQLETLNQPQIAIVGSRNASIDSQKIAHQFAGQLVEQELVVTSGLALGVDGYAHDG
ALKAAGKTIAVLGSGLASIYPSRHKNLAARIIENGALVSEFRPNAKPRPTHFPRRNRIISGLSMGVLVVEAAEKSGSLIT
ARYATEQNREVFVVPGSILNPNCVGSNRLIQQGACLVQNVQQIVDELESMLDFNRLQPQQCQHTLFLSLNSEDELPFPEL
LANVGEEATPVDILASRTHIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=89234 OCV04_RS14510 WP_171138786.1 3138494..3139609(-) (dprA) [Vibrio plantisponsor strain CECT 7581]
ATGAATGAAAGGGATTTATCAGCATGGTTAGCGCTAAGCTTTACGCCAAAACTGAGCAAAAAGTCTGTTAAACAGTTATT
GAGCCGAGATTCCCTCTTCAACCTTTTTAGCTATTCAGCCAGCCAATGGCAGGCGGTAGGATTGGCTTCTGATCAGATTC
ACTATTTGATGCATGATGCTGAGCGAGAGGTGGAAGAATCTCTCGAGTGGTTAAAGGCACAAACCGGAAGGCATATCATC
ACGCCATTTTGTGATTCGTATCCTGCTCTACTGCAACAAATCTCCTCAAAACCAGATGTTCTGTTTGTTGAAGGACAACT
GGAAACATTGAATCAACCACAAATCGCTATTGTTGGTAGTCGTAACGCCAGTATTGATAGTCAGAAGATTGCTCATCAGT
TTGCAGGGCAGTTAGTGGAACAAGAGTTGGTGGTCACCAGTGGTTTAGCTTTGGGAGTTGATGGCTATGCTCATGATGGT
GCGTTGAAAGCCGCTGGTAAAACGATCGCTGTTTTAGGCTCTGGGCTAGCGTCTATCTATCCTTCGAGACATAAAAATCT
CGCCGCTCGTATTATAGAAAACGGTGCTTTAGTTTCAGAGTTTCGTCCTAATGCGAAACCTCGCCCAACCCATTTTCCTC
GGCGCAACCGGATCATCAGTGGTTTATCTATGGGCGTTCTGGTCGTTGAGGCGGCGGAAAAAAGCGGATCTTTGATTACC
GCTCGCTATGCAACTGAACAAAACCGAGAGGTTTTTGTGGTACCGGGATCTATTCTTAACCCCAATTGTGTGGGCAGTAA
TCGCCTAATTCAGCAGGGCGCATGCTTAGTTCAGAATGTACAACAGATTGTTGATGAACTTGAATCTATGCTGGATTTCA
ATCGCTTACAGCCTCAGCAATGTCAGCATACACTTTTTTTATCCTTAAATAGCGAAGATGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAGAAGAAGCTACACCAGTTGATATTCTTGCAAGCAGGACCCATATACCTGTCCAAGAAGTCATGAT
GCAGCTCTTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

62.534

100

0.625
  dprA Vibrio campbellii strain DS40M4

61.351

99.73

0.612
  dprA Glaesserella parasuis strain SC1401

43.396

100

0.434
  dprA Legionella pneumophila strain ERS1305867

43.014

98.383

0.423
  dprA Neisseria meningitidis strain C311

36.658

100

0.396
  dprA Neisseria meningitidis MC58

36.658

100

0.396
  dprA Neisseria gonorrhoeae MS11

36.25

100

0.391
  dprA Neisseria gonorrhoeae strain FA1090

35.75

100

0.385
  dprA Haemophilus influenzae Rd KW20

47.458

79.515

0.377
  dprA Acinetobacter baylyi ADP1

39.359

92.453

0.364

Multiple sequence alignment