Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCV04_RS13515 Genome accession   NZ_AP024893
Coordinates   2918097..2919842 (-) Length   581 a.a.
NCBI ID   WP_102941191.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2913097..2924842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS13495 - 2913832..2914653 (-) 822 WP_171138347.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  OCV04_RS20785 - 2914724..2915029 (-) 306 Protein_2583 SPOR domain-containing protein -
  OCV04_RS13500 - 2915167..2916232 (-) 1066 Protein_2584 ATP-binding protein -
  OCV04_RS13505 aroB 2916279..2917364 (-) 1086 WP_171138345.1 3-dehydroquinate synthase -
  OCV04_RS13510 aroK 2917392..2917910 (-) 519 WP_042485096.1 shikimate kinase AroK -
  OCV04_RS13515 pilQ 2918097..2919842 (-) 1746 WP_102941191.1 type IV pilus secretin PilQ Machinery gene
  OCV04_RS13520 pilP 2919861..2920376 (-) 516 WP_171138344.1 pilus assembly protein PilP Machinery gene
  OCV04_RS13525 pilO 2920373..2920972 (-) 600 WP_171138343.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV04_RS13530 pilN 2920965..2921552 (-) 588 WP_171138342.1 PilN domain-containing protein Machinery gene
  OCV04_RS13535 pilM 2921542..2922552 (-) 1011 WP_102941195.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63319.22 Da        Isoelectric Point: 4.5310

>NTDB_id=89226 OCV04_RS13515 WP_102941191.1 2918097..2919842(-) (pilQ) [Vibrio plantisponsor strain CECT 7581]
MNKWLQIRHHAIRRMLVTLSLCLAPTVMASSDNAIPNQLSNIDFKINADKAAVIIIELASASSVVDVSKSDQGLNIELLN
TQVSDDKLFVLDVSDFATVVETIEVFRQQSNGLLEVKVKGDYQYDYQLNKNVLEVVIRKSEPQPKQEQKALLEQDNKPIS
FNFQDIPVRNVLQLIADYNGFNLVVSDSVTGNMTLRLDGVPWQKALNIILEARGLDKRIDGNVILVAPKSELDLREQQEL
EKARMEEALGDLQSDIIKISFAKASDIAEMINGEGALTMLSERGSISIDERTNALLIRELPENITVIRDIVKSLDVPVKQ
VQIEARIVTVNEGDLEELGVRWGFTSTNGSHTAGGSIESNLFVSDLYDSGDGEGGDSGKGTVPVDDFLNVNLAATAAGAS
SIAFQVAKLGADTLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQGTELPYLEASSSGATTVSFRKAVLSLMVTPQI
TPDNRLVLDLSVTQDRVGDVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSLTNSVEKVPLLGDLPLLGALFRR
SYEKMGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=89226 OCV04_RS13515 WP_102941191.1 2918097..2919842(-) (pilQ) [Vibrio plantisponsor strain CECT 7581]
ATGAATAAATGGCTTCAAATAAGGCATCACGCTATCAGGCGTATGTTAGTAACCCTATCTCTTTGTCTTGCCCCTACTGT
CATGGCAAGTAGTGATAATGCGATTCCAAATCAACTCAGTAATATTGATTTCAAAATTAATGCAGATAAGGCAGCTGTGA
TCATCATTGAGTTAGCCTCTGCTTCCTCAGTGGTGGATGTGTCAAAGAGCGACCAAGGTTTAAACATTGAACTACTTAAT
ACACAAGTTTCAGACGATAAACTGTTTGTTTTAGATGTCTCTGATTTCGCGACGGTTGTAGAGACTATTGAAGTATTTCG
CCAGCAGTCGAATGGACTTCTCGAAGTGAAGGTGAAAGGGGACTATCAATACGACTATCAGCTAAATAAGAATGTATTAG
AGGTGGTGATCCGTAAGTCTGAGCCACAACCTAAACAAGAGCAGAAAGCTTTGTTAGAACAAGACAACAAGCCAATCTCG
TTTAACTTTCAAGATATCCCGGTTCGCAATGTATTACAGCTTATAGCGGACTATAACGGCTTTAACCTCGTGGTTTCTGA
TTCGGTAACAGGCAATATGACACTGCGCTTGGATGGTGTGCCTTGGCAAAAAGCGCTCAATATCATTCTTGAAGCGAGAG
GTTTGGACAAACGAATCGATGGTAATGTCATTTTGGTCGCACCAAAGAGCGAGCTTGATTTGCGTGAGCAACAAGAACTT
GAGAAGGCGCGCATGGAAGAAGCGTTGGGCGATTTGCAGTCTGACATCATTAAAATCAGCTTTGCCAAAGCTTCAGATAT
TGCCGAGATGATTAATGGTGAAGGGGCTCTCACTATGCTGTCTGAGCGAGGCTCTATCAGTATTGATGAAAGAACCAATG
CGCTGTTGATTCGTGAATTACCAGAGAACATTACGGTTATTCGAGACATAGTAAAGTCTTTAGATGTGCCGGTGAAACAG
GTTCAGATTGAGGCTCGTATCGTGACGGTTAATGAAGGTGACTTAGAAGAGCTTGGGGTTCGCTGGGGATTCACTTCAAC
CAATGGCAGTCATACTGCTGGAGGCAGTATTGAAAGCAATCTGTTTGTCTCGGATCTGTATGATTCTGGTGATGGTGAAG
GTGGTGACAGCGGAAAAGGTACGGTTCCGGTAGACGATTTTCTGAATGTCAATTTAGCCGCGACGGCCGCTGGCGCATCG
AGTATTGCTTTCCAAGTCGCCAAGTTAGGAGCCGACACACTGTTGGACCTAGAACTTTCCGCACTTCAAAGAGAGTCTAA
AGCTGAAATTATTTCCAGCCCGAGATTGATCACCACCAATAAAAAGCCTGCCTACATTGAACAAGGTACGGAACTACCTT
ATTTAGAAGCGTCTTCCAGCGGTGCGACGACTGTTTCGTTTCGTAAGGCGGTGTTGAGCTTAATGGTGACGCCACAAATC
ACACCGGATAACCGATTGGTTCTCGATCTCAGTGTGACGCAAGACCGTGTAGGAGATGTCGTAAAAACAGGTACTGGTGA
AGCGGTTGCGATTAATACTCAGAGAATCGGAACTCAGGTACTGGTCAATAATGGCGAAACGGTTGTTTTAGGCGGAATTT
TTCAGCACAGCCTAACCAACTCAGTTGAGAAAGTGCCTTTATTAGGTGATCTTCCGTTATTGGGAGCTTTATTCCGTCGA
AGCTATGAAAAAATGGGGAAAAGTGAGTTACTAATATTTGTTACGCCTAAGGTGGTTATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(421-579)

Bacterial type II/III secretion system short domain (Secretin_N)

(256-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

73.192

97.59

0.714
  pilQ Vibrio cholerae strain A1552

73.192

97.59

0.714
  pilQ Vibrio campbellii strain DS40M4

72.222

96.041

0.694
  comQ Acinetobacter baylyi ADP1

39.175

100

0.392
  pilQ Legionella pneumophila strain ERS1305867

40.585

94.148

0.382
  pilQ Legionella pneumophila strain Lp02

40.585

94.148

0.382
  pilQ Pseudomonas aeruginosa PAK

39.318

95.869

0.377
  pilQ Acinetobacter baumannii strain A118

37.265

100

0.375
  pilQ Acinetobacter baumannii D1279779

37.265

100

0.375

Multiple sequence alignment