Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABK10_RS20780 Genome accession   NZ_AP027694
Coordinates   4187557..4188294 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PSS-11     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4182557..4193294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK10_RS20750 (VEE21_39380) yfiL 4182715..4183080 (-) 366 WP_274506605.1 DUF2799 domain-containing protein -
  AABK10_RS20755 (VEE21_39390) aroF 4183290..4184360 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AABK10_RS20760 (VEE21_39400) tyrA 4184371..4185492 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABK10_RS20765 (VEE21_39410) pheA 4185535..4186695 (-) 1161 WP_338389169.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABK10_RS20770 pheL 4186794..4186841 (-) 48 WP_010723158.1 phe operon leader peptide -
  AABK10_RS20775 (VEE21_39420) raiA 4186945..4187286 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABK10_RS20780 (VEE21_39430) comL 4187557..4188294 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABK10_RS20785 (VEE21_39440) rluD 4188429..4189409 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABK10_RS20790 (VEE21_39450) yfiH 4189406..4190137 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  AABK10_RS20795 (VEE21_39460) clpC 4190267..4192840 (+) 2574 WP_274506607.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=89229 AABK10_RS20780 WP_000197686.1 4187557..4188294(-) (comL) [Escherichia coli strain PSS-11]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=89229 AABK10_RS20780 WP_000197686.1 4187557..4188294(-) (comL) [Escherichia coli strain PSS-11]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment