Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK10_RS20490 Genome accession   NZ_AP027694
Coordinates   4131749..4132264 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain PSS-11     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4126749..4137264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK10_RS20445 (VEE21_38820) csrA 4127469..4127654 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABK10_RS20475 (VEE21_38830) yqaB 4128979..4129545 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK10_RS20480 (VEE21_38840) yqaA 4129542..4129970 (+) 429 WP_222698466.1 YqaA family protein -
  AABK10_RS20485 (VEE21_38850) gshA 4130043..4131599 (+) 1557 WP_274506483.1 glutamate--cysteine ligase -
  AABK10_RS20490 (VEE21_38860) luxS 4131749..4132264 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABK10_RS20495 (VEE21_38870) emrB 4132328..4133866 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK10_RS20500 (VEE21_38880) emrA 4133883..4135055 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK10_RS20505 (VEE21_38890) emrR 4135182..4135712 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK10_RS20510 (VEE21_38900) ygaH 4135803..4136138 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABK10_RS20515 (VEE21_38910) ygaZ 4136128..4136865 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=89228 AABK10_RS20490 WP_001130211.1 4131749..4132264(+) (luxS) [Escherichia coli strain PSS-11]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=89228 AABK10_RS20490 WP_001130211.1 4131749..4132264(+) (luxS) [Escherichia coli strain PSS-11]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment