Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV27_RS00170 Genome accession   NZ_AP024889
Coordinates   37115..38209 (+) Length   364 a.a.
NCBI ID   WP_245986630.1    Uniprot ID   -
Organism   Vibrio pectenicida strain LMG 19642     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 32115..43209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV27_RS00150 trkA 32596..33972 (-) 1377 WP_125319597.1 Trk system potassium transporter TrkA -
  OCV27_RS00155 rsmB 34014..35300 (-) 1287 WP_125319598.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCV27_RS00160 fmt 35357..36304 (-) 948 WP_125319599.1 methionyl-tRNA formyltransferase -
  OCV27_RS00165 def 36327..36848 (-) 522 WP_125319613.1 peptide deformylase -
  OCV27_RS00170 dprA 37115..38209 (+) 1095 WP_245986630.1 DNA-processing protein DprA Machinery gene
  OCV27_RS00175 - 38206..38685 (+) 480 WP_125319601.1 DUF494 family protein -
  OCV27_RS00180 - 38690..39280 (+) 591 WP_125319602.1 type I DNA topoisomerase -
  OCV27_RS00185 - 39315..40451 (-) 1137 WP_125319603.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV27_RS00190 purE 40455..40940 (-) 486 WP_125319604.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV27_RS00195 - 41139..41696 (+) 558 WP_125319605.1 L-threonylcarbamoyladenylate synthase -
  OCV27_RS00200 hemF 41719..42636 (+) 918 WP_125319606.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39678.51 Da        Isoelectric Point: 6.8941

>NTDB_id=89162 OCV27_RS00170 WP_245986630.1 37115..38209(+) (dprA) [Vibrio pectenicida strain LMG 19642]
MSLYFTPRIGPKTFQQIVALDSPSNITQSSPQALAALGFNSRQIHYLNNKASKDVDECFEWQQAERTRSLLTFNDAKYPA
QLKLVDSAPPVIFLEGKVESLLQPQIAIVGSRSASIEGLNLARDFSNQLSKHALTITSGMALGVDGYAHDGALQAGGETV
AVLGCGLGSVYPARHKKLAQRIVQQGALVSEFHPNVKPKAENFPRRNRIISGLSLGVLVVEAAEKSGSLITARYAIEQGR
EVFAIPGSIYHPHARGCNLLIKQGACLVQQVSDIMDEMECLIRWSDFYPSKAAEEAFEQIDCKEELPFSQLLANVGNKAI
PVDILANRTNIPVQDVMMQLLELELLGHVVAVSGGYIRKGRGEL

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=89162 OCV27_RS00170 WP_245986630.1 37115..38209(+) (dprA) [Vibrio pectenicida strain LMG 19642]
TTGAGTCTGTACTTTACGCCAAGAATCGGCCCTAAGACCTTCCAGCAGATTGTTGCTTTGGACTCACCATCCAACATCAC
TCAATCTTCACCACAAGCTTTAGCTGCGTTAGGCTTTAATTCTCGGCAAATTCATTATTTGAATAATAAAGCCTCTAAAG
ATGTTGATGAGTGTTTTGAATGGCAGCAGGCAGAACGTACTAGGAGTCTTTTAACTTTTAATGATGCTAAGTATCCTGCG
CAGCTCAAGCTGGTGGACTCTGCTCCGCCAGTAATATTTTTGGAAGGTAAGGTGGAAAGTTTATTGCAGCCACAAATTGC
TATTGTCGGCAGCCGAAGTGCGAGTATTGAAGGTCTTAATCTTGCAAGGGACTTTTCCAATCAATTATCTAAGCACGCTT
TGACGATCACCAGTGGTATGGCCTTAGGAGTGGATGGTTATGCGCATGATGGTGCTTTGCAAGCAGGAGGAGAAACCGTT
GCTGTTTTGGGTTGCGGCTTGGGTAGTGTCTATCCAGCTCGCCATAAAAAATTGGCGCAAAGAATAGTGCAGCAGGGGGC
TTTAGTGTCTGAATTTCATCCTAATGTAAAGCCTAAGGCAGAAAACTTTCCCCGCCGAAATCGAATAATTAGTGGCTTGT
CTTTGGGCGTTTTAGTGGTTGAAGCGGCTGAAAAAAGTGGTTCGCTGATAACTGCTCGCTATGCAATAGAGCAAGGACGT
GAGGTCTTTGCAATACCTGGTTCAATCTACCACCCGCATGCGAGAGGGTGTAATTTATTGATAAAGCAAGGCGCATGTTT
AGTTCAACAGGTTTCTGACATTATGGATGAAATGGAATGTTTGATACGTTGGTCTGATTTTTATCCCTCCAAAGCGGCAG
AGGAAGCATTTGAACAAATTGATTGCAAAGAAGAATTGCCATTTTCTCAGCTGTTAGCTAACGTAGGTAATAAGGCTATA
CCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTTCAAGATGTCATGATGCAGCTTTTAGAGCTTGAACTCTTAGG
GCACGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCGAGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(68-269)

DprA winged helix domain (DprA_WH)

(309-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

58.84

99.451

0.585
  dprA Vibrio cholerae strain A1552

56.319

100

0.563
  dprA Glaesserella parasuis strain SC1401

45.43

100

0.464
  dprA Legionella pneumophila strain ERS1305867

42.34

98.626

0.418
  dprA Neisseria meningitidis strain C311

38.66

100

0.412
  dprA Neisseria meningitidis MC58

38.66

100

0.412
  dprA Acinetobacter baumannii D1279779

42.899

92.857

0.398
  dprA Acinetobacter baylyi ADP1

41.499

95.33

0.396
  dprA Neisseria gonorrhoeae strain FA1090

36.856

100

0.393
  dprA Neisseria gonorrhoeae MS11

36.856

100

0.393
  dprA Acinetobacter baumannii strain A118

42.308

92.857

0.393

Multiple sequence alignment