Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RTE98_RS09835 Genome accession   NZ_CP136501
Coordinates   2105979..2107196 (+) Length   405 a.a.
NCBI ID   WP_267932282.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain L27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2100979..2112196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTE98_RS09820 (RTE98_09820) cysN 2100994..2102892 (+) 1899 WP_316959137.1 sulfate adenylyltransferase subunit CysN -
  RTE98_RS09825 (RTE98_09825) pilA 2103481..2103963 (-) 483 WP_042928458.1 pilin Machinery gene
  RTE98_RS09830 (RTE98_09830) pilB 2104274..2105977 (+) 1704 WP_267932281.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RTE98_RS09835 (RTE98_09835) pilC 2105979..2107196 (+) 1218 WP_267932282.1 type II secretion system F family protein Machinery gene
  RTE98_RS09840 (RTE98_09840) pilD 2107199..2108068 (+) 870 WP_316959139.1 A24 family peptidase Machinery gene
  RTE98_RS09845 (RTE98_09845) coaE 2108201..2108809 (+) 609 WP_316959140.1 dephospho-CoA kinase -
  RTE98_RS09850 (RTE98_09850) yacG 2108806..2109003 (+) 198 WP_102840588.1 DNA gyrase inhibitor YacG -
  RTE98_RS09855 (RTE98_09855) - 2109028..2109708 (-) 681 WP_316959141.1 energy-coupling factor ABC transporter permease -
  RTE98_RS09860 (RTE98_09860) - 2109747..2110784 (-) 1038 WP_316959142.1 NADP(H)-dependent aldo-keto reductase -
  RTE98_RS09865 (RTE98_09865) rplM 2111228..2111656 (+) 429 WP_063544471.1 50S ribosomal protein L13 -
  RTE98_RS09870 (RTE98_09870) rpsI 2111671..2112063 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44105.89 Da        Isoelectric Point: 9.8752

>NTDB_id=891204 RTE98_RS09835 WP_267932282.1 2105979..2107196(+) (pilC) [Stutzerimonas frequens strain L27]
MAQKAIKTSVFTWEGTNKQGAKIKGELSGISPAMVKAQLRKQGVNPQKVRKKSASLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSETLQAWWHLVLLGLFLAAFAFK
TAHGKSERFRDWFDRLLLKVPIVGEILYKSAVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRNATMKVKSDVSSGM
QLNFSMRTTGTFPTMAVQMAAIGEESGSLDEMLAKVATFYEDEVDNMVDGLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=891204 RTE98_RS09835 WP_267932282.1 2105979..2107196(+) (pilC) [Stutzerimonas frequens strain L27]
ATGGCGCAGAAAGCGATTAAAACCAGTGTGTTCACCTGGGAAGGCACCAACAAGCAGGGTGCGAAGATCAAGGGCGAGCT
AAGCGGAATCAGCCCTGCGATGGTCAAGGCGCAGCTGCGTAAGCAGGGCGTAAACCCTCAGAAGGTGCGTAAGAAGTCGG
CGTCGCTGTTCAGTGCTGGCAAGAAGATCAAGCCGATGGATATCGCCTTGTTCACTCGTCAGATGGCGACCATGATGAAG
GCCGGTGTGCCGCTGCTGCAGTCATTCGACATTATTGGCGAGGGGTTCGATAACCCGAACATGCGTAAGCTGGTCGATGA
CCTCAAGCAGGAGGTCGCGGCGGGTAACAGCTTCGCCACGGCGTTGCGCAAGAAGCCACAGTACTTTGACGATCTCTACT
GCAACCTGGTGGACTCGGGCGAGCAGTCTGGCTCCTTGGAGACGTTGCTCGATCGCGTTGCGACCTACAAGGAAAAAACC
GAGGCTCTCAAGGCAAAGATCAAGAAGGCGATGAATTATCCGATCGCCGTCGTACTCGTCGCGATCATTGTTTCCGCGAT
CCTGTTGATCAAGGTCGTTCCTCAGTTTCAGGAAGTTTTTGCCAACTTCGGCGCGGAGCTTCCAGCATTTACGCTCATGG
TCATTGGTCTGTCCGAAACCCTGCAGGCCTGGTGGCACTTGGTCCTGCTAGGGTTGTTCCTCGCTGCCTTTGCATTCAAG
ACTGCCCATGGTAAATCAGAGCGGTTTCGCGACTGGTTCGATCGCTTGTTGCTGAAGGTGCCGATCGTCGGCGAGATTCT
TTACAAATCGGCAGTGGCACGATTCGCTCGGACCTTGTCCACGACATTCGCTGCGGGTGTGCCTTTGGTGGACGCTCTGG
ATTCGGTTGCCGGAGCGACCGGTAATGTGGTGTTCCGCAATGCAACGATGAAAGTCAAAAGCGACGTATCGTCCGGTATG
CAGCTGAACTTCTCCATGCGCACCACCGGTACCTTTCCAACCATGGCGGTACAGATGGCGGCGATTGGCGAGGAGTCCGG
CTCGCTTGACGAGATGCTGGCCAAGGTGGCGACCTTTTACGAGGATGAGGTCGACAACATGGTTGATGGTCTGACAAGCC
TGATGGAGCCCATGATCATGGCGGTCTTGGGGGTTCTGGTCGGTGGCTTGATCATTGCCATGTATCTCCCGATCTTCCAA
CTGGGTTCCGTCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

90.37

100

0.904
  pilC Acinetobacter baylyi ADP1

59.36

100

0.595
  pilC Acinetobacter baumannii D1279779

58.272

100

0.583
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilG Neisseria gonorrhoeae MS11

44.913

99.506

0.447
  pilG Neisseria meningitidis 44/76-A

44.913

99.506

0.447
  pilC Vibrio cholerae strain A1552

43.434

97.778

0.425
  pilC Vibrio campbellii strain DS40M4

41.667

97.778

0.407