Detailed information NTG0891205

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RTE98_RS09840
• Genome accession: NZ_CP136501
• Coordinates: 2107199..2108068 (+)
• Length: 289 a.a.
• NCBI ID: WP_316959139.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain L27
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2102199..2113068

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RTE98_RS09825 (RTE98_09825)	pilA	2103481..2103963 (-)	483	WP_042928458.1	pilin	Machinery gene
RTE98_RS09830 (RTE98_09830)	pilB	2104274..2105977 (+)	1704	WP_267932281.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RTE98_RS09835 (RTE98_09835)	pilC	2105979..2107196 (+)	1218	WP_267932282.1	type II secretion system F family protein	Machinery gene
RTE98_RS09840 (RTE98_09840)	pilD	2107199..2108068 (+)	870	WP_316959139.1	A24 family peptidase	Machinery gene
RTE98_RS09845 (RTE98_09845)	coaE	2108201..2108809 (+)	609	WP_316959140.1	dephospho-CoA kinase	-
RTE98_RS09850 (RTE98_09850)	yacG	2108806..2109003 (+)	198	WP_102840588.1	DNA gyrase inhibitor YacG	-
RTE98_RS09855 (RTE98_09855)	-	2109028..2109708 (-)	681	WP_316959141.1	energy-coupling factor ABC transporter permease	-
RTE98_RS09860 (RTE98_09860)	-	2109747..2110784 (-)	1038	WP_316959142.1	NADP(H)-dependent aldo-keto reductase	-
RTE98_RS09865 (RTE98_09865)	rplM	2111228..2111656 (+)	429	WP_063544471.1	50S ribosomal protein L13	-
RTE98_RS09870 (RTE98_09870)	rpsI	2111671..2112063 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
RTE98_RS09875 (RTE98_09875)	petA	2112318..2112911 (+)	594	WP_156244357.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32280.43 Da
• Isoelectric Point: 7.9130

>NTDB_id=891205 RTE98_RS09840 WP_316959139.1 2107199..2108068(+) (pilD) [Stutzerimonas frequens strain L27]
MILIDYLASHVLAFVLSAAVLGLLVGSFLNVLIYRLPVMMQREWRVQAREFLELPCEPVGERFNLLLPNSRCPHCAHRIR
AWENVPLISWLLLRGKCSSCRAPISCRYPLVELACGVLSGYVTWHFGFSWQAAMILLLTWGLLAMSMIDVDHQLLPDSLV
LPLLWLGLIVNHFGLFTSLESALWGAVTGYLSLWSVYWLFKLATGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGSILLKVQRAESGTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 870 bp

>NTDB_id=891205 RTE98_RS09840 WP_316959139.1 2107199..2108068(+) (pilD) [Stutzerimonas frequens strain L27]
ATGATTCTGATCGATTACCTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCAGCAGTGCTCGGTCTGCTGGTTGGCAG
TTTCCTAAACGTCCTCATCTACCGGTTGCCGGTGATGATGCAGCGCGAATGGCGGGTGCAGGCCAGAGAATTTCTTGAGC
TGCCATGCGAACCGGTCGGTGAACGATTCAACCTGTTGCTACCGAATTCGCGCTGTCCGCATTGCGCTCATCGAATCCGC
GCATGGGAAAACGTTCCGCTGATCAGTTGGCTGTTGTTGCGTGGCAAGTGTTCATCCTGCCGGGCGCCGATCAGTTGTCG
TTACCCGTTGGTGGAGCTGGCATGCGGTGTGCTCTCCGGCTATGTGACATGGCATTTCGGCTTTTCCTGGCAGGCCGCCA
TGATACTGCTGCTGACCTGGGGTCTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTATTGCCTGACTCGCTTGTG
CTGCCGTTGTTGTGGCTGGGGTTGATCGTTAACCACTTCGGCTTGTTCACTTCGCTGGAAAGTGCGCTGTGGGGGGCGGT
GACGGGTTATCTGAGTCTTTGGTCGGTGTACTGGCTTTTCAAGCTCGCCACCGGCAAAGAGGGCATGGGCTACGGCGATT
TCAAGCTGTTGGCGATGCTTGGTGCCTGGGGTGGCTGGCAGGTATTGCCGCTTACCATCCTGTTGTCGTCAGTGGTCGGA
GCGGTGCTGGGTTCCATTCTTTTGAAGGTTCAGCGTGCAGAAAGCGGCACGCCCATTCCCTTTGGCCCTTATCTGGCGAT
CGCTGGGTGGATTGCGCTTCTCTGGGGTGACAGGATCACCGAGAGCTATCTGCAATTCGCCCGCTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.311	94.464	0.522
pilD	Vibrio campbellii strain DS40M4	54.579	94.464	0.516
pilD	Acinetobacter baumannii D1279779	51.056	98.27	0.502
pilD	Acinetobacter nosocomialis M2	51.056	98.27	0.502
pilD	Neisseria gonorrhoeae MS11	53.612	91.003	0.488