Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | RTE98_RS09825 | Genome accession | NZ_CP136501 |
| Coordinates | 2103481..2103963 (-) | Length | 160 a.a. |
| NCBI ID | WP_042928458.1 | Uniprot ID | - |
| Organism | Stutzerimonas frequens strain L27 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2098481..2108963
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RTE98_RS09810 (RTE98_09810) | - | 2099113..2099871 (+) | 759 | WP_316959136.1 | Nif3-like dinuclear metal center hexameric protein | - |
| RTE98_RS09815 (RTE98_09815) | cysD | 2100065..2100981 (+) | 917 | Protein_1932 | sulfate adenylyltransferase subunit CysD | - |
| RTE98_RS09820 (RTE98_09820) | cysN | 2100994..2102892 (+) | 1899 | WP_316959137.1 | sulfate adenylyltransferase subunit CysN | - |
| RTE98_RS09825 (RTE98_09825) | pilA | 2103481..2103963 (-) | 483 | WP_042928458.1 | pilin | Machinery gene |
| RTE98_RS09830 (RTE98_09830) | pilB | 2104274..2105977 (+) | 1704 | WP_267932281.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| RTE98_RS09835 (RTE98_09835) | pilC | 2105979..2107196 (+) | 1218 | WP_267932282.1 | type II secretion system F family protein | Machinery gene |
| RTE98_RS09840 (RTE98_09840) | pilD | 2107199..2108068 (+) | 870 | WP_316959139.1 | A24 family peptidase | Machinery gene |
| RTE98_RS09845 (RTE98_09845) | coaE | 2108201..2108809 (+) | 609 | WP_316959140.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 16080.25 Da Isoelectric Point: 8.4800
>NTDB_id=891202 RTE98_RS09825 WP_042928458.1 2103481..2103963(-) (pilA) [Stutzerimonas frequens strain L27]
MKTQMQKGFTLIELMIVVAIIGILAAVALPAYQDYTTRARVTEGLSLASAAKTTVAENAANGAPFARGYTAPTATDNVTS
VAIAEATGEITITYTNRAGGGTLVLAPRDGGPAGNALAGTATASTVPSQGNITWNCLAAGSTKAGTTGTLQAKFAPSECR
MKTQMQKGFTLIELMIVVAIIGILAAVALPAYQDYTTRARVTEGLSLASAAKTTVAENAANGAPFARGYTAPTATDNVTS
VAIAEATGEITITYTNRAGGGTLVLAPRDGGPAGNALAGTATASTVPSQGNITWNCLAAGSTKAGTTGTLQAKFAPSECR
Nucleotide
Download Length: 483 bp
>NTDB_id=891202 RTE98_RS09825 WP_042928458.1 2103481..2103963(-) (pilA) [Stutzerimonas frequens strain L27]
ATGAAAACTCAGATGCAGAAGGGTTTTACCCTGATTGAATTGATGATCGTTGTTGCGATCATTGGTATTTTGGCTGCTGT
TGCGCTACCTGCCTATCAAGACTACACAACCCGCGCTCGGGTAACTGAAGGACTCAGCCTTGCCTCTGCCGCAAAAACTA
CCGTGGCGGAGAACGCCGCAAATGGCGCGCCTTTCGCGCGAGGCTACACAGCGCCAACCGCTACGGACAACGTCACCTCT
GTCGCGATTGCAGAAGCAACCGGTGAGATTACCATCACCTATACTAACCGCGCTGGTGGCGGAACATTGGTTTTGGCGCC
GCGCGATGGCGGCCCGGCAGGCAACGCTCTTGCTGGCACGGCAACTGCTTCAACCGTGCCTAGCCAAGGCAACATCACTT
GGAACTGCTTGGCAGCGGGCTCCACTAAAGCCGGCACCACGGGAACTCTCCAGGCCAAGTTCGCGCCCTCGGAATGCCGC
TAA
ATGAAAACTCAGATGCAGAAGGGTTTTACCCTGATTGAATTGATGATCGTTGTTGCGATCATTGGTATTTTGGCTGCTGT
TGCGCTACCTGCCTATCAAGACTACACAACCCGCGCTCGGGTAACTGAAGGACTCAGCCTTGCCTCTGCCGCAAAAACTA
CCGTGGCGGAGAACGCCGCAAATGGCGCGCCTTTCGCGCGAGGCTACACAGCGCCAACCGCTACGGACAACGTCACCTCT
GTCGCGATTGCAGAAGCAACCGGTGAGATTACCATCACCTATACTAACCGCGCTGGTGGCGGAACATTGGTTTTGGCGCC
GCGCGATGGCGGCCCGGCAGGCAACGCTCTTGCTGGCACGGCAACTGCTTCAACCGTGCCTAGCCAAGGCAACATCACTT
GGAACTGCTTGGCAGCGGGCTCCACTAAAGCCGGCACCACGGGAACTCTCCAGGCCAAGTTCGCGCCCTCGGAATGCCGC
TAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
52.941 |
100 |
0.562 |
| pilA2 | Legionella pneumophila str. Paris |
53.125 |
100 |
0.531 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
52.5 |
100 |
0.525 |
| comP | Acinetobacter baylyi ADP1 |
42.69 |
100 |
0.456 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
37.5 |
100 |
0.45 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.365 |
99.375 |
0.381 |