Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MCACP_RS00795 Genome accession   NZ_CP136420
Coordinates   142498..142938 (+) Length   146 a.a.
NCBI ID   WP_406677514.1    Uniprot ID   -
Organism   Moorella sp. ACPs     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 137498..147938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCACP_RS00760 (MCACP_01520) - 138022..138960 (+) 939 WP_406677508.1 HEAT repeat domain-containing protein -
  MCACP_RS00765 (MCACP_01530) - 138905..139090 (+) 186 WP_406677509.1 DUF951 domain-containing protein -
  MCACP_RS00770 (MCACP_01540) - 139077..139586 (-) 510 WP_406677510.1 CGGC domain-containing protein -
  MCACP_RS00775 (MCACP_01560) - 139866..140571 (+) 706 Protein_145 carbon monoxide dehydrogenase -
  MCACP_RS00780 (MCACP_01570) - 140744..141499 (+) 756 WP_406677511.1 acyl-[acyl-carrier-protein] thioesterase -
  MCACP_RS00785 (MCACP_01580) - 141559..141819 (+) 261 WP_406677512.1 DUF5395 family protein -
  MCACP_RS00790 (MCACP_01600) rpsF 142177..142473 (+) 297 WP_406677513.1 30S ribosomal protein S6 -
  MCACP_RS00795 (MCACP_01610) ssbA 142498..142938 (+) 441 WP_406677514.1 single-stranded DNA-binding protein Machinery gene
  MCACP_RS00800 (MCACP_01620) rpsR 142959..143186 (+) 228 WP_406677515.1 30S ribosomal protein S18 -
  MCACP_RS00805 (MCACP_01630) - 143272..144255 (+) 984 WP_406677516.1 YybS family protein -
  MCACP_RS00810 (MCACP_01640) rplI 144262..144714 (+) 453 WP_406677517.1 50S ribosomal protein L9 -
  MCACP_RS00815 (MCACP_01650) lonC 144720..146651 (+) 1932 WP_406677518.1 Lon family ATP-dependent protease -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16348.30 Da        Isoelectric Point: 4.6527

>NTDB_id=890879 MCACP_RS00795 WP_406677514.1 142498..142938(+) (ssbA) [Moorella sp. ACPs]
MLNRVILIGRLTRDPELRYTASGIAVTTFTLAVDRNYVNQQGERGTDFIRITVWRKLAETCANHLNKGRLVAVEGRLQTR
TYETPDGQKRQATDVVADDVRFLDWPRDGKIPGGVNPVADMGADSFSQDFSDIGTEVDMSEDDLPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=890879 MCACP_RS00795 WP_406677514.1 142498..142938(+) (ssbA) [Moorella sp. ACPs]
ATGTTAAACCGGGTAATTCTAATTGGCCGGCTGACGCGGGACCCCGAACTGCGCTATACGGCCAGCGGTATCGCCGTAAC
AACCTTTACCCTCGCGGTAGATAGGAATTATGTCAACCAGCAGGGAGAACGGGGAACTGATTTTATTCGCATCACCGTGT
GGCGGAAGCTCGCGGAAACCTGCGCCAACCACTTGAATAAAGGGCGCCTGGTAGCCGTTGAAGGCCGTCTCCAGACGCGT
ACCTATGAAACGCCGGATGGCCAGAAACGCCAGGCTACCGACGTGGTAGCCGATGATGTCCGTTTTCTGGACTGGCCCAG
GGATGGAAAGATCCCCGGCGGGGTAAATCCCGTGGCGGATATGGGCGCTGATAGCTTCAGCCAGGATTTTAGCGATATTG
GCACTGAAGTAGATATGAGCGAAGATGATTTACCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.087

100

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

39.888

100

0.486
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.376

74.658

0.384
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.356

100

0.384
  ssbB/cilA Streptococcus pneumoniae R6

37.671

100

0.377
  ssbB/cilA Streptococcus mitis SK321

37.671

100

0.377
  ssbB/cilA Streptococcus mitis NCTC 12261

37.671

100

0.377
  ssbB Streptococcus sobrinus strain NIDR 6715-7

37.671

100

0.377
  ssbB/cilA Streptococcus pneumoniae Rx1

37.671

100

0.377
  ssbB/cilA Streptococcus pneumoniae D39

37.671

100

0.377
  ssbA Streptococcus mutans UA159

36.301

100

0.363