Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU74_RS00610 Genome accession   NZ_AP024883
Coordinates   137124..138269 (+) Length   381 a.a.
NCBI ID   WP_087483003.1    Uniprot ID   A0A1Y6IZB0
Organism   Vibrio mangrovi strain CECT 7927     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 132124..143269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU74_RS00590 trkA 132650..134026 (-) 1377 WP_087483007.1 Trk system potassium transporter TrkA -
  OCU74_RS00595 rsmB 134107..135402 (-) 1296 WP_087483006.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCU74_RS00600 fmt 135454..136419 (-) 966 WP_087483005.1 methionyl-tRNA formyltransferase -
  OCU74_RS00605 def 136431..136952 (-) 522 WP_087483004.1 peptide deformylase -
  OCU74_RS00610 dprA 137124..138269 (+) 1146 WP_087483003.1 DNA-processing protein DprA Machinery gene
  OCU74_RS00615 - 138275..138748 (+) 474 WP_200807801.1 DUF494 family protein -
  OCU74_RS00620 - 138759..139367 (+) 609 WP_087483001.1 type I DNA topoisomerase -
  OCU74_RS00625 - 139434..140564 (-) 1131 WP_087483000.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU74_RS00630 purE 140569..141054 (-) 486 WP_087482999.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU74_RS00635 - 141270..141827 (+) 558 WP_087483033.1 L-threonylcarbamoyladenylate synthase -
  OCU74_RS00640 hemF 141833..142747 (+) 915 WP_087482998.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41664.98 Da        Isoelectric Point: 7.0053

>NTDB_id=89065 OCU74_RS00610 WP_087483003.1 137124..138269(+) (dprA) [Vibrio mangrovi strain CECT 7927]
MRQLTSHVSEQDRLLIWIKLSLVPRLGIQSILKLLGKVSIDSLCDYSGKEWLTLGFSPEQVTYLSGPAKRMADDCLQWLE
RGEHRHILPHFSAEYPALLKEIPSPPPILFVQGDVPLLSAPQIAIVGSRYASVQGLQDAWHFANEFAQHQVAVTSGLALG
IDGQAHQGVLDGGGRTIAVLGAGLERIYPARHRGLAERILEHKKGALVSEFCPSTPPKSMNFPRRNRIISGLSLGVLVIE
AAEKSGSLITARYAAEQNRDVFVIPGSIHQVGYRGSNALIRDGACLVQNIDQILSEVGTLSAWVKHEEKIQQNELFPSLI
DDEELPFAEVLANVGVKATPVDILATRTHIPVHEVMRQLLELELSGHVVAVAGGYIRKGRG

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=89065 OCU74_RS00610 WP_087483003.1 137124..138269(+) (dprA) [Vibrio mangrovi strain CECT 7927]
ATGCGTCAACTTACCTCTCACGTCAGTGAACAAGACAGATTATTGATTTGGATAAAGCTTTCTCTGGTTCCTCGTTTGGG
AATTCAGTCGATCTTAAAACTATTGGGAAAAGTTTCGATCGATTCTCTGTGTGATTATTCCGGAAAAGAATGGCTCACTC
TTGGTTTTTCTCCGGAGCAGGTGACTTATTTGTCCGGCCCGGCAAAGAGGATGGCGGATGATTGCCTTCAATGGCTGGAG
CGTGGCGAGCATCGCCACATTCTCCCTCATTTTTCGGCAGAATATCCGGCATTGCTCAAGGAGATTCCCTCGCCTCCTCC
GATTTTGTTTGTTCAGGGGGATGTTCCGCTTCTGTCGGCACCACAGATTGCGATTGTCGGAAGCAGGTATGCCAGTGTGC
AGGGATTGCAAGATGCATGGCATTTTGCGAATGAATTTGCTCAGCATCAAGTAGCAGTTACGAGTGGGCTGGCTTTAGGC
ATTGATGGTCAGGCTCATCAGGGCGTTTTAGATGGTGGAGGCAGAACAATTGCGGTTCTGGGAGCCGGGCTGGAACGGAT
TTATCCGGCTCGTCACCGGGGTTTGGCTGAACGGATTCTTGAGCATAAAAAAGGTGCTCTGGTGTCAGAATTTTGTCCCT
CAACACCTCCGAAATCAATGAATTTTCCACGTCGTAACCGTATTATCAGTGGGTTATCTCTGGGGGTTCTGGTTATTGAA
GCTGCAGAAAAAAGCGGCTCACTGATTACAGCAAGGTATGCAGCAGAGCAAAACCGGGATGTTTTTGTGATCCCGGGGTC
AATTCATCAGGTTGGTTACCGGGGGAGTAACGCTTTAATTCGTGATGGGGCTTGCTTAGTTCAGAATATTGATCAGATAC
TCTCCGAAGTTGGTACGTTATCTGCTTGGGTTAAGCATGAAGAGAAAATTCAGCAAAATGAACTTTTTCCGTCACTAATT
GACGACGAAGAATTGCCATTTGCTGAAGTGTTAGCTAACGTAGGGGTAAAGGCTACACCAGTTGATATTCTTGCAACGCG
CACCCATATACCTGTTCATGAAGTGATGAGACAGCTCCTAGAGCTGGAATTATCCGGGCACGTGGTTGCAGTTGCTGGTG
GCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(326-374)

DNA recombination-mediator protein A (DNA_processg_A)

(86-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6IZB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

58.152

96.588

0.562
  dprA Vibrio cholerae strain A1552

56.684

98.163

0.556
  dprA Glaesserella parasuis strain SC1401

46.237

97.638

0.451
  dprA Legionella pneumophila strain ERS1305867

49.669

79.265

0.394
  dprA Acinetobacter baumannii strain A118

38.342

100

0.388
  dprA Acinetobacter baumannii D1279779

37.565

100

0.381
  dprA Neisseria meningitidis strain C311

35.222

100

0.375
  dprA Neisseria meningitidis MC58

35.222

100

0.375
  dprA Neisseria gonorrhoeae MS11

34.804

100

0.373
  dprA Neisseria gonorrhoeae strain FA1090

34.559

100

0.37

Multiple sequence alignment