Detailed information NTG0887057

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: RSK81_RS11550
• Genome accession: NZ_CP135591
• Coordinates: 2335700..2336134 (-)
• Length: 144 a.a.
• NCBI ID: WP_002934686.1
• Uniprot ID: A0AA96NSE4
• Organism: Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2330700..2341134

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RSK81_RS11515 (RSK81_11515)	-	2330722..2331360 (-)	639	WP_061595030.1	hypothetical protein	-
RSK81_RS11520 (RSK81_11520)	-	2331478..2332227 (-)	750	WP_061595031.1	CPBP family intramembrane glutamic endopeptidase	-
RSK81_RS11525 (RSK81_11525)	-	2332370..2333563 (-)	1194	WP_002911070.1	acetate kinase	-
RSK81_RS11530 (RSK81_11530)	comYH	2333600..2334565 (-)	966	WP_314831042.1	class I SAM-dependent methyltransferase	Machinery gene
RSK81_RS11535 (RSK81_11535)	comGG	2334647..2335039 (-)	393	WP_048771947.1	competence type IV pilus minor pilin ComGG	-
RSK81_RS11540 (RSK81_11540)	comGF/cglF	2335020..2335457 (-)	438	WP_002927109.1	competence type IV pilus minor pilin ComGF	Machinery gene
RSK81_RS11545 (RSK81_11545)	comGE/cglE	2335441..2335734 (-)	294	WP_002911065.1	competence type IV pilus minor pilin ComGE	Machinery gene
RSK81_RS11550 (RSK81_11550)	comYD	2335700..2336134 (-)	435	WP_002934686.1	competence type IV pilus minor pilin ComGD	Machinery gene
RSK81_RS11555 (RSK81_11555)	comYC	2336094..2336411 (-)	318	WP_002927120.1	competence type IV pilus major pilin ComGC	Machinery gene
RSK81_RS11560 (RSK81_11560)	comYB	2336411..2337445 (-)	1035	WP_260469178.1	competence type IV pilus assembly protein ComGB	Machinery gene
RSK81_RS11565 (RSK81_11565)	comYA	2337375..2338316 (-)	942	WP_315686885.1	competence type IV pilus ATPase ComGA	Machinery gene
RSK81_RS11570 (RSK81_11570)	-	2338446..2338826 (-)	381	WP_002901723.1	DUF1033 family protein	-
RSK81_RS11575 (RSK81_11575)	-	2339145..2340251 (-)	1107	WP_002923025.1	glycosyl hydrolase family 8	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16325.70 Da
• Isoelectric Point: 8.4418

>NTDB_id=887057 RSK81_RS11550 WP_002934686.1 2335700..2336134(-) (comYD) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MENTVAKLKQLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLAGHEKLSLKISGR
QISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLSKITFQTEDRTVVYQLYMGNGKFKKTTASG

Nucleotide

• Length: 435 bp

>NTDB_id=887057 RSK81_RS11550 WP_002934686.1 2335700..2336134(-) (comYD) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGGAAAACACAGTGGCGAAACTCAAGCAGTTGCCAATTAAGGCTTTTACGCTGCTGGAAAGTCTCCTCGTTCTTTTTGT
TGTTAGTTTTCTACTACTAGGATTATCTGGCTCGGTCAGGGCTGGCTTCAATCAGGTTCAAGAGCAACTCTTCTTTTTAG
AGTTTGAGAGGCTCTACCAGGAGACGCAGAGGCTGAGCTTGGCTGGGCATGAGAAGCTTTCTCTCAAGATTTCAGGACGG
CAGATTTCCAATGGCTATCAAGAGCTGGACTTTCCGCAAACTTTGCAGGAACATGAGCAGCAAGTCATTCAGTTTGACCG
GGCTGGTGGGAATTCATCACTCAGCAAAATTACTTTTCAGACGGAGGACAGGACAGTTGTTTACCAGCTTTATATGGGGA
ATGGCAAGTTTAAAAAGACGACAGCTTCAGGCTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	60.284	97.917	0.59
comGD/cglD	Streptococcus mitis NCTC 12261	58.333	91.667	0.535
comGD/cglD	Streptococcus pneumoniae Rx1	59.055	88.194	0.521
comGD/cglD	Streptococcus pneumoniae D39	59.055	88.194	0.521
comGD/cglD	Streptococcus pneumoniae R6	59.055	88.194	0.521
comGD/cglD	Streptococcus mitis SK321	59.055	88.194	0.521
comGD/cglD	Streptococcus pneumoniae TIGR4	58.268	88.194	0.514
comYD	Streptococcus mutans UA140	48.837	89.583	0.437
comYD	Streptococcus mutans UA159	48.837	89.583	0.437
comGD	Lactococcus lactis subsp. cremoris KW2	41.221	90.972	0.375