Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   RSK81_RS11560 Genome accession   NZ_CP135591
Coordinates   2336411..2337445 (-) Length   344 a.a.
NCBI ID   WP_260469178.1    Uniprot ID   -
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2331411..2342445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS11520 (RSK81_11520) - 2331478..2332227 (-) 750 WP_061595031.1 CPBP family intramembrane glutamic endopeptidase -
  RSK81_RS11525 (RSK81_11525) - 2332370..2333563 (-) 1194 WP_002911070.1 acetate kinase -
  RSK81_RS11530 (RSK81_11530) comYH 2333600..2334565 (-) 966 WP_314831042.1 class I SAM-dependent methyltransferase Machinery gene
  RSK81_RS11535 (RSK81_11535) comGG 2334647..2335039 (-) 393 WP_048771947.1 competence type IV pilus minor pilin ComGG -
  RSK81_RS11540 (RSK81_11540) comGF/cglF 2335020..2335457 (-) 438 WP_002927109.1 competence type IV pilus minor pilin ComGF Machinery gene
  RSK81_RS11545 (RSK81_11545) comGE/cglE 2335441..2335734 (-) 294 WP_002911065.1 competence type IV pilus minor pilin ComGE Machinery gene
  RSK81_RS11550 (RSK81_11550) comYD 2335700..2336134 (-) 435 WP_002934686.1 competence type IV pilus minor pilin ComGD Machinery gene
  RSK81_RS11555 (RSK81_11555) comYC 2336094..2336411 (-) 318 WP_002927120.1 competence type IV pilus major pilin ComGC Machinery gene
  RSK81_RS11560 (RSK81_11560) comYB 2336411..2337445 (-) 1035 WP_260469178.1 competence type IV pilus assembly protein ComGB Machinery gene
  RSK81_RS11565 (RSK81_11565) comYA 2337375..2338316 (-) 942 WP_315686885.1 competence type IV pilus ATPase ComGA Machinery gene
  RSK81_RS11570 (RSK81_11570) - 2338446..2338826 (-) 381 WP_002901723.1 DUF1033 family protein -
  RSK81_RS11575 (RSK81_11575) - 2339145..2340251 (-) 1107 WP_002923025.1 glycosyl hydrolase family 8 -
  RSK81_RS11580 (RSK81_11580) - 2340260..2341570 (-) 1311 WP_002901729.1 glycosyltransferase family 2 protein -
  RSK81_RS11585 (RSK81_11585) - 2341563..2341706 (-) 144 WP_002896778.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39055.93 Da        Isoelectric Point: 9.1581

>NTDB_id=887059 RSK81_RS11560 WP_260469178.1 2336411..2337445(-) (comYB) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MISFLQKDISVLSKGRQKKLSTPKQKKIIELFHNLFSSGFHLAEIVDFLRRSALLEEVYVAEMRAGLSAGQSFSEIVSRL
GFSDSVVTQLSLSELHGNLTLSLGKIEAYLENLSKVKKKLIEVGTYPLMLLGFLVLIMLGLRNYLLPQLDSQNLATQLIN
HLPQIFLWSSLAWAALVSVALFYYRKSSKIRFFSKLAALPFFGHLVQAYLTAYYAREWGNMIGQGLELSQIFAIMQEQPS
QLFKEIGEDMSAALQGGQGYADKVASYPFFKKELSLMIEYGEVKSKLGSELEVYAEKTWEEFFLRINRAMNFIQPLVFIF
VALVIVLLYAAMLLPIYQNMEVHL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=887059 RSK81_RS11560 WP_260469178.1 2336411..2337445(-) (comYB) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
TTGATCAGCTTTTTGCAGAAGGACATATCAGTGCTGAGCAAAGGCAGACAGAAAAAATTGTCTACGCCTAAGCAGAAAAA
GATTATTGAGCTCTTTCATAATCTCTTTAGCAGCGGTTTTCACTTAGCAGAGATTGTAGACTTTCTGAGACGAAGTGCCT
TGCTGGAGGAAGTGTATGTCGCAGAAATGCGGGCAGGCTTGTCAGCTGGTCAGTCCTTTTCAGAGATTGTCAGTCGACTG
GGATTTTCCGACAGCGTTGTAACCCAGCTTTCCTTATCTGAGCTGCATGGCAATCTGACACTTAGTCTGGGCAAAATTGA
GGCCTATCTGGAAAATCTGTCCAAGGTTAAGAAAAAATTGATAGAGGTAGGGACCTATCCTCTCATGCTGCTGGGCTTTT
TGGTCCTTATCATGCTGGGATTGCGCAACTATCTTCTGCCTCAATTAGACAGCCAGAATCTAGCTACTCAGCTGATTAAT
CACCTGCCTCAGATTTTTTTGTGGAGCAGCCTTGCTTGGGCCGCCTTGGTTTCAGTGGCTCTCTTTTATTATCGAAAGTC
ATCCAAGATTCGTTTTTTCAGCAAACTAGCAGCTCTGCCCTTTTTTGGACATTTGGTACAGGCTTACTTGACCGCTTATT
ATGCTCGTGAATGGGGAAATATGATTGGTCAGGGCTTGGAACTGAGTCAGATTTTTGCGATTATGCAGGAGCAGCCTTCC
CAGCTCTTTAAAGAAATCGGAGAAGACATGTCTGCAGCTTTGCAGGGCGGTCAAGGCTATGCGGACAAGGTGGCAAGCTA
TCCTTTCTTTAAGAAAGAATTGTCCTTAATGATCGAGTATGGTGAGGTAAAGTCCAAGTTGGGGAGTGAACTGGAAGTCT
ATGCTGAAAAGACTTGGGAGGAATTTTTCCTACGTATCAACCGAGCCATGAATTTCATTCAGCCCCTAGTATTTATTTTT
GTTGCCTTAGTGATTGTTTTACTTTATGCGGCAATGCTCTTGCCCATTTATCAGAATATGGAGGTTCATTTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

73.837

100

0.738
  comGB/cglB Streptococcus mitis NCTC 12261

70.238

97.674

0.686
  comGB/cglB Streptococcus mitis SK321

69.048

97.674

0.674
  comGB/cglB Streptococcus pneumoniae TIGR4

68.155

97.674

0.666
  comGB/cglB Streptococcus pneumoniae R6

68.155

97.674

0.666
  comGB/cglB Streptococcus pneumoniae Rx1

68.155

97.674

0.666
  comGB/cglB Streptococcus pneumoniae D39

68.155

97.674

0.666
  comYB Streptococcus mutans UA140

61.224

99.709

0.61
  comYB Streptococcus mutans UA159

61.224

99.709

0.61
  comGB Lactococcus lactis subsp. cremoris KW2

50.742

97.965

0.497