Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QYQ95_RS02580 Genome accession   NZ_CP135176
Coordinates   510758..511987 (-) Length   409 a.a.
NCBI ID   WP_016800652.1    Uniprot ID   A0AAN0LU55
Organism   Vibrio cyclitrophicus ZF270     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505758..516987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ95_RS02540 (QYQ95_02540) rpsP 505891..506139 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  QYQ95_RS02545 (QYQ95_02545) rimM 506164..506718 (+) 555 WP_016768202.1 ribosome maturation factor RimM -
  QYQ95_RS02550 (QYQ95_02550) trmD 506745..507485 (+) 741 WP_016800646.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QYQ95_RS02555 (QYQ95_02555) rplS 507545..507898 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  QYQ95_RS02560 (QYQ95_02560) yacG 508159..508356 (-) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  QYQ95_RS02565 (QYQ95_02565) zapD 508438..509178 (-) 741 WP_010435917.1 cell division protein ZapD -
  QYQ95_RS02570 (QYQ95_02570) coaE 509205..509819 (-) 615 WP_016800649.1 dephospho-CoA kinase -
  QYQ95_RS02575 (QYQ95_02575) pilD 509822..510691 (-) 870 WP_016768203.1 A24 family peptidase Machinery gene
  QYQ95_RS02580 (QYQ95_02580) pilC 510758..511987 (-) 1230 WP_016800652.1 type II secretion system F family protein Machinery gene
  QYQ95_RS02585 (QYQ95_02585) pilB 512002..513687 (-) 1686 WP_016800654.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QYQ95_RS02590 (QYQ95_02590) pilA 513687..514160 (-) 474 WP_016800656.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QYQ95_RS02595 (QYQ95_02595) nadC 514414..515304 (-) 891 WP_016800658.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QYQ95_RS02600 (QYQ95_02600) ampD 515388..515987 (+) 600 WP_016791286.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45151.10 Da        Isoelectric Point: 10.1000

>NTDB_id=885971 QYQ95_RS02580 WP_016800652.1 510758..511987(-) (pilC) [Vibrio cyclitrophicus ZF270]
MSSKSKQSQLKNYHWKGINSSGKKMSGQSLALTELEVREKLKEQHIQIKKIKKKSISAITRITHRVKAKDITVLTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKAKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLDLSHWMQAYSFYTALGIGATSL
VVHQLCQRSYSIRLSASRLVLRFPVLGGVMAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGSLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=885971 QYQ95_RS02580 WP_016800652.1 510758..511987(-) (pilC) [Vibrio cyclitrophicus ZF270]
ATGAGTAGTAAAAGCAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATCAATAGTTCTGGCAAGAAAATGTCTGG
GCAGAGCTTAGCGCTCACCGAATTAGAAGTGCGAGAGAAGCTCAAAGAGCAACATATCCAAATTAAGAAAATCAAAAAGA
AAAGTATCTCCGCAATCACTCGCATAACACACCGAGTCAAAGCTAAGGACATCACCGTTTTAACTCGGCAACTCGCGACT
ATGTTGGCTACGGGTGTGCCTATTGTACAAGCCATCAAGTTGGTATCAGATAATCATCGTAAAGCAGAAATGAAATCTAT
TTTATCGCATATCTGCAAAGGTGTAGAAGCCGGAACGCCAATCTCAAAAGCAATGAGAACCGCAAGCCGCCACTTTGACG
ATCTCTACACCGACCTAGTCGCCACCGGAGAGCTTTCCGGCAACCTCGCACAAGTCTTTGAACGCTTAGCGACCTATCGT
GAAAAAAGTGAACAGTTAAAAGCTAAGGTGGTGAAAGCGCTTATCTATCCAGCAATGGTGGTCACGGTTGCGCTGACCGT
CTCCTATCTCATGCTCACCATGGTCATCCCAGAGTTTGAATCGATGTTTTCAGGCTTTGGTGCCGATCTTCCCTGGTTCA
CCCAACAAGTCCTCGACCTGTCTCATTGGATGCAAGCTTACAGTTTTTATACCGCCCTAGGCATCGGGGCTACCAGCCTG
GTTGTTCATCAACTGTGCCAACGTTCTTACTCGATTCGACTATCAGCCAGCCGCTTAGTGTTACGCTTTCCTGTACTAGG
TGGCGTAATGGCAAAGGCCTCTATCGCCAAGTTCAGCCGCACCTTATCAACCAGCTTTAGTTCTGGTATTCCGATTCTAA
TGAGCCTCAAAACTACAGCCAAAACCGCAGGCAGTCTGCATTATGAATCTGCGATCATCGAAGTACACCGAGAAACAGCC
GCGGGTATGCCGATGTATATTGCAATGCGCAATACCAATGCCTTCCCTGAAATGGTGTTACAGATGGTGATGATTGGTGA
AGAGTCAGGTAACCTTGATGATATGCTGAATAAAGTCGCTTCCATCTATGAGTTTGAAGTCGACAATACCGTCGACAACT
TAGGCAAAATTTTAGAGCCACTGATCATCGTGTTTTTAGGTACAGTTGTGGGTGGGCTTGTTGTCGCGATGTACTTACCA
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79

97.8

0.773
  pilC Vibrio campbellii strain DS40M4

73.775

99.756

0.736
  pilC Acinetobacter baylyi ADP1

41.565

100

0.416
  pilC Legionella pneumophila strain ERS1305867

42.394

98.044

0.416
  pilC Acinetobacter baumannii D1279779

41.089

98.778

0.406
  pilC Pseudomonas stutzeri DSM 10701

40.347

98.778

0.399
  pilG Neisseria gonorrhoeae MS11

40.1

97.555

0.391
  pilG Neisseria meningitidis 44/76-A

39.85

97.555

0.389