Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QYQ95_RS02590 Genome accession   NZ_CP135176
Coordinates   513687..514160 (-) Length   157 a.a.
NCBI ID   WP_016800656.1    Uniprot ID   A0AAN0LNR5
Organism   Vibrio cyclitrophicus ZF270     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508687..519160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ95_RS02570 (QYQ95_02570) coaE 509205..509819 (-) 615 WP_016800649.1 dephospho-CoA kinase -
  QYQ95_RS02575 (QYQ95_02575) pilD 509822..510691 (-) 870 WP_016768203.1 A24 family peptidase Machinery gene
  QYQ95_RS02580 (QYQ95_02580) pilC 510758..511987 (-) 1230 WP_016800652.1 type II secretion system F family protein Machinery gene
  QYQ95_RS02585 (QYQ95_02585) pilB 512002..513687 (-) 1686 WP_016800654.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QYQ95_RS02590 (QYQ95_02590) pilA 513687..514160 (-) 474 WP_016800656.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QYQ95_RS02595 (QYQ95_02595) nadC 514414..515304 (-) 891 WP_016800658.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QYQ95_RS02600 (QYQ95_02600) ampD 515388..515987 (+) 600 WP_016791286.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QYQ95_RS02605 (QYQ95_02605) pdhR 516469..517230 (+) 762 WP_016768209.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16733.05 Da        Isoelectric Point: 5.8402

>NTDB_id=885973 QYQ95_RS02590 WP_016800656.1 513687..514160(-) (pilA) [Vibrio cyclitrophicus ZF270]
MNNKSKRTNQKGFTLIELMIVVAIIGILSAFAVPAYQDYTKKATLSEFPKAAAAVKMAVELCAHESASDGDTFKTNCVST
TDNIPAAFDLNSMNILAIGGTSSGAVDVRVKATAIKGPIAANETYVMTATYTTNGITWESKCYTDAALNNQQETYCP

Nucleotide


Download         Length: 474 bp        

>NTDB_id=885973 QYQ95_RS02590 WP_016800656.1 513687..514160(-) (pilA) [Vibrio cyclitrophicus ZF270]
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTAGTGGCGATTATTGGGAT
CTTATCGGCGTTTGCTGTTCCTGCTTATCAAGATTACACGAAAAAAGCGACTCTATCCGAATTTCCGAAAGCAGCCGCTG
CTGTAAAAATGGCTGTTGAATTATGTGCACATGAAAGTGCTTCGGATGGTGATACATTTAAAACAAATTGTGTAAGTACT
ACCGACAATATTCCCGCAGCATTTGACCTTAACAGTATGAACATATTAGCTATTGGAGGCACCAGTTCAGGAGCTGTAGA
TGTAAGAGTCAAAGCGACTGCAATCAAAGGGCCTATTGCTGCAAATGAAACTTACGTAATGACAGCAACGTATACTACAA
ATGGCATCACGTGGGAGAGTAAGTGTTATACAGACGCAGCATTGAACAATCAACAAGAGACCTACTGCCCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio campbellii strain DS40M4

58.17

97.452

0.567
  pilA Haemophilus influenzae 86-028NP

40

95.541

0.382
  comP Acinetobacter baylyi ADP1

40.559

91.083

0.369