Detailed information NTG0885970

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QYQ95_RS02575
• Genome accession: NZ_CP135176
• Coordinates: 509822..510691 (-)
• Length: 289 a.a.
• NCBI ID: WP_016768203.1
• Uniprot ID: A0AAN0LNW9
• Organism: Vibrio cyclitrophicus ZF270
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 504822..515691

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYQ95_RS02540 (QYQ95_02540)	rpsP	505891..506139 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
QYQ95_RS02545 (QYQ95_02545)	rimM	506164..506718 (+)	555	WP_016768202.1	ribosome maturation factor RimM	-
QYQ95_RS02550 (QYQ95_02550)	trmD	506745..507485 (+)	741	WP_016800646.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QYQ95_RS02555 (QYQ95_02555)	rplS	507545..507898 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
QYQ95_RS02560 (QYQ95_02560)	yacG	508159..508356 (-)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
QYQ95_RS02565 (QYQ95_02565)	zapD	508438..509178 (-)	741	WP_010435917.1	cell division protein ZapD	-
QYQ95_RS02570 (QYQ95_02570)	coaE	509205..509819 (-)	615	WP_016800649.1	dephospho-CoA kinase	-
QYQ95_RS02575 (QYQ95_02575)	pilD	509822..510691 (-)	870	WP_016768203.1	A24 family peptidase	Machinery gene
QYQ95_RS02580 (QYQ95_02580)	pilC	510758..511987 (-)	1230	WP_016800652.1	type II secretion system F family protein	Machinery gene
QYQ95_RS02585 (QYQ95_02585)	pilB	512002..513687 (-)	1686	WP_016800654.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QYQ95_RS02590 (QYQ95_02590)	pilA	513687..514160 (-)	474	WP_016800656.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
QYQ95_RS02595 (QYQ95_02595)	nadC	514414..515304 (-)	891	WP_016800658.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32578.79 Da
• Isoelectric Point: 7.9444

>NTDB_id=885970 QYQ95_RS02575 WP_016768203.1 509822..510691(-) (pilD) [Vibrio cyclitrophicus ZF270]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRAI
DNIPVLSWLFLKGKCRSCTNPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=885970 QYQ95_RS02575 WP_016768203.1 509822..510691(-) (pilD) [Vibrio cyclitrophicus ZF270]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCACCAGAAGGAAAGTTTAATCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTGAGAGCAATC
GACAACATCCCTGTATTAAGCTGGTTATTCCTAAAAGGTAAGTGCCGCAGTTGTACTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACAGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTAGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCCATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.702	100	0.737
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446