Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RQL82_RS16375 Genome accession   NZ_CP135159
Coordinates   3464486..3465712 (+) Length   408 a.a.
NCBI ID   WP_329759913.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AR3651     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3459486..3470712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQL82_RS16340 (RQL82_16400) rimP 3460156..3460680 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  RQL82_RS16360 (RQL82_16420) secG 3461318..3461647 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  RQL82_RS16365 (RQL82_16425) tpiA 3461660..3462454 (-) 795 WP_284091282.1 triose-phosphate isomerase -
  RQL82_RS16370 (RQL82_16430) pilB 3462746..3464458 (+) 1713 WP_329759912.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RQL82_RS16375 (RQL82_16435) pilC 3464486..3465712 (+) 1227 WP_329759913.1 type II secretion system F family protein Machinery gene
  RQL82_RS16380 (RQL82_16440) pilD 3465712..3466572 (+) 861 WP_276124893.1 prepilin peptidase Machinery gene
  RQL82_RS16385 (RQL82_16445) coaE 3466574..3467170 (+) 597 WP_276124892.1 dephospho-CoA kinase -
  RQL82_RS16390 (RQL82_16450) - 3467167..3468081 (-) 915 WP_329759916.1 DMT family transporter -
  RQL82_RS16395 (RQL82_16455) rlmB 3468117..3468866 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RQL82_RS16400 (RQL82_16460) - 3468969..3469295 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  RQL82_RS16405 (RQL82_16465) - 3469372..3470682 (-) 1311 WP_329759917.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45027.45 Da        Isoelectric Point: 9.8207

>NTDB_id=885754 RQL82_RS16375 WP_329759913.1 3464486..3465712(+) (pilC) [Acinetobacter pittii strain AR3651]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=885754 RQL82_RS16375 WP_329759913.1 3464486..3465712(+) (pilC) [Acinetobacter pittii strain AR3651]
ATGACTGTGAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAAGGCGTAAAAATTAAGGGAGA
ACTTCCGGCTAAAAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGAGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAGAAAGTATCGACACTCGATATCACGATTTTCACCCGTCAACTTGCAACA
ATGATGAAAGCAGGGGTTCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGTCTAGAAAACCCTGCTATGCGCGAGGT
GGTACTCGGGATTAAAGGCGAAGTGGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGCGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATCAAAAAAGCTATGAAATATCCAGCAACGGTTATTGTGGTTGCTGTGATTGT
TACCATTATTTTGATGGTTAAAGTAGTGCCTGTGTTTCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTTA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTTATTATGATTATTGCGATTGGGGCAATTATTGCT
GCATTTCTGGAAGCCAAGAAGCGTAGTAAAAAATTCCGCGATGGTTTAGATAAACTCACACTGAAACTACCTATCTTTGG
CGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTAGCT
ACAGGCCAACAACTTCAATTTGCAATGCGTGTTTCAAATCGTTTTCCCTCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGTGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.049

100

0.85
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

37.157

98.284

0.365