NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	RQL82_RS16380	Genome accession	NZ_CP135159
Coordinates	3465712..3466572 (+)	Length	286 a.a.
NCBI ID	WP_276124893.1	Uniprot ID	-
Organism	Acinetobacter pittii strain AR3651
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3460712..3471572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RQL82_RS16360 (RQL82_16420)	secG	3461318..3461647 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
RQL82_RS16365 (RQL82_16425)	tpiA	3461660..3462454 (-)	795	WP_284091282.1	triose-phosphate isomerase	-
RQL82_RS16370 (RQL82_16430)	pilB	3462746..3464458 (+)	1713	WP_329759912.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RQL82_RS16375 (RQL82_16435)	pilC	3464486..3465712 (+)	1227	WP_329759913.1	type II secretion system F family protein	Machinery gene
RQL82_RS16380 (RQL82_16440)	pilD	3465712..3466572 (+)	861	WP_276124893.1	prepilin peptidase	Machinery gene
RQL82_RS16385 (RQL82_16445)	coaE	3466574..3467170 (+)	597	WP_276124892.1	dephospho-CoA kinase	-
RQL82_RS16390 (RQL82_16450)	-	3467167..3468081 (-)	915	WP_329759916.1	DMT family transporter	-
RQL82_RS16395 (RQL82_16455)	rlmB	3468117..3468866 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RQL82_RS16400 (RQL82_16460)	-	3468969..3469295 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
RQL82_RS16405 (RQL82_16465)	-	3469372..3470682 (-)	1311	WP_329759917.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32150.67 Da Isoelectric Point: 7.1044

                                >NTDB_id=885755 RQL82_RS16380 WP_276124893.1 3465712..3466572(+) (pilD) [Acinetobacter pittii strain AR3651]

MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=885755 RQL82_RS16380 WP_276124893.1 3465712..3466572(+) (pilD) [Acinetobacter pittii strain AR3651]

ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCGCTATTGAGCCTATGTATTGG

TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA

ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG

CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATCGTTTTTGGTCCAACCCTACAAA

TGCTTTGGGGACTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTGCTCCCCGACCGT

TTTACCCTACCTTTGGCTGCACTCGGCTTAGGCATTAATACCTTTAATATCTACACCTCGCCTAACTCAGCCATTTGGGG

ATATTTAATCGGGTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCTGCCTTAGGTGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA

CTCGGTGCAATTATTGGCATCATTTTATTAAAATTGCGCAATGATAATCAGCCCTTTGCGTTTGGGCCCTATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	96.154	100	0.962
pilD	Acinetobacter nosocomialis M2	95.804	100	0.958
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437

Detailed information NTG0885755