Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QN325_RS00860 Genome accession   NZ_CP135101
Coordinates   161551..161946 (-) Length   131 a.a.
NCBI ID   WP_000282447.1    Uniprot ID   A0AAV3JLT6
Organism   Streptococcus agalactiae strain HU13/21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 126732..170844 161551..161946 within 0


Gene organization within MGE regions


Location: 126732..170844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN325_RS00680 (QN325_00680) - 126853..127143 (-) 291 WP_000158581.1 DUF5962 family protein -
  QN325_RS00685 (QN325_00685) - 127154..128008 (-) 855 WP_018368155.1 phage replisome organizer N-terminal domain-containing protein -
  QN325_RS00690 (QN325_00690) - 128020..128304 (-) 285 WP_001287945.1 hypothetical protein -
  QN325_RS00695 (QN325_00695) - 128451..128969 (+) 519 WP_000181342.1 helix-turn-helix domain-containing protein -
  QN325_RS00700 (QN325_00700) - 129024..130178 (+) 1155 WP_410530729.1 tyrosine-type recombinase/integrase -
  QN325_RS00705 (QN325_00705) rpsI 130322..130714 (-) 393 WP_000035940.1 30S ribosomal protein S9 -
  QN325_RS00710 (QN325_00710) rplM 130735..131181 (-) 447 WP_001865567.1 50S ribosomal protein L13 -
  QN325_RS00715 (QN325_00715) - 131406..131525 (-) 120 Protein_121 transcriptional regulator -
  QN325_RS00720 (QN325_00720) - 132062..132922 (-) 861 WP_000143135.1 DegV family protein -
  QN325_RS00725 (QN325_00725) - 133015..133533 (-) 519 WP_000716636.1 NYN domain-containing protein -
  QN325_RS00730 (QN325_00730) rlmB 133530..134285 (-) 756 WP_000178026.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QN325_RS00735 (QN325_00735) - 134388..134774 (-) 387 WP_000568029.1 Mini-ribonuclease 3 -
  QN325_RS00740 (QN325_00740) cysS 134767..136110 (-) 1344 WP_000591131.1 cysteine--tRNA ligase -
  QN325_RS00745 (QN325_00745) - 136107..136289 (-) 183 WP_000656476.1 lipoprotein -
  QN325_RS00750 (QN325_00750) cysE 136299..136883 (-) 585 WP_000539954.1 serine O-acetyltransferase -
  QN325_RS00755 (QN325_00755) - 136892..137644 (-) 753 WP_000204782.1 SseB family protein -
  QN325_RS00760 (QN325_00760) pnp 137646..139775 (-) 2130 WP_000043850.1 polyribonucleotide nucleotidyltransferase -
  QN325_RS00765 (QN325_00765) rpsO 140156..140425 (-) 270 WP_001018249.1 30S ribosomal protein S15 -
  QN325_RS00770 (QN325_00770) - 140513..141772 (-) 1260 WP_001203071.1 ferric reductase-like transmembrane domain-containing protein -
  QN325_RS00775 (QN325_00775) - 141881..142810 (-) 930 WP_001203821.1 transketolase family protein -
  QN325_RS00780 (QN325_00780) - 142807..143664 (-) 858 WP_000203489.1 transketolase -
  QN325_RS00785 (QN325_00785) - 143667..145022 (-) 1356 WP_000677358.1 PTS ascorbate transporter subunit IIC -
  QN325_RS00790 (QN325_00790) - 145035..145319 (-) 285 WP_000944235.1 PTS sugar transporter subunit IIB -
  QN325_RS00795 (QN325_00795) - 145322..147355 (-) 2034 WP_000228184.1 BglG family transcription antiterminator -
  QN325_RS00800 (QN325_00800) treC 147571..149196 (-) 1626 WP_000151017.1 alpha,alpha-phosphotrehalase -
  QN325_RS00805 (QN325_00805) treP 149418..151448 (-) 2031 WP_000434616.1 PTS system trehalose-specific EIIBC component -
  QN325_RS00810 (QN325_00810) - 151731..152357 (-) 627 WP_000171311.1 ABC transporter ATP-binding protein -
  QN325_RS00815 (QN325_00815) - 152341..153144 (-) 804 WP_000140984.1 ABC transporter ATP-binding protein -
  QN325_RS00820 (QN325_00820) - 153156..153977 (-) 822 WP_000603397.1 ABC transporter permease -
  QN325_RS00825 (QN325_00825) - 153974..154951 (-) 978 WP_000680645.1 ABC transporter permease -
  QN325_RS00830 (QN325_00830) - 155064..156692 (-) 1629 WP_000170504.1 ABC transporter substrate-binding protein -
  QN325_RS00835 (QN325_00835) lrgB 156935..157663 (-) 729 WP_000421726.1 antiholin-like protein LrgB -
  QN325_RS00840 (QN325_00840) - 157665..158120 (-) 456 WP_000683316.1 CidA/LrgA family protein -
  QN325_RS00845 (QN325_00845) - 158290..159030 (-) 741 WP_000697630.1 LytR/AlgR family response regulator transcription factor -
  QN325_RS00850 (QN325_00850) - 159011..160756 (-) 1746 WP_000930334.1 LytS/YhcK type 5TM receptor domain-containing protein -
  QN325_RS00855 (QN325_00855) - 160783..161427 (-) 645 WP_000416611.1 HAD family hydrolase -
  QN325_RS00860 (QN325_00860) ssbA 161551..161946 (-) 396 WP_000282447.1 single-stranded DNA-binding protein Machinery gene
  QN325_RS00865 (QN325_00865) - 162027..162743 (+) 717 WP_000186185.1 class I SAM-dependent methyltransferase -
  QN325_RS00870 (QN325_00870) ytpR 162797..163423 (-) 627 WP_000578328.1 YtpR family tRNA-binding protein -
  QN325_RS00875 (QN325_00875) - 163456..163779 (-) 324 WP_000602781.1 thioredoxin family protein -
  QN325_RS00880 (QN325_00880) - 163776..164060 (-) 285 WP_000791272.1 DUF4651 domain-containing protein -
  QN325_RS00885 (QN325_00885) - 164220..164459 (+) 240 WP_000660180.1 hypothetical protein -
  QN325_RS00890 (QN325_00890) pepA 164644..165711 (+) 1068 WP_001281323.1 glutamyl aminopeptidase -
  QN325_RS00895 (QN325_00895) proC 165781..166551 (+) 771 WP_001865901.1 pyrroline-5-carboxylate reductase -
  QN325_RS00900 (QN325_00900) - 166572..167237 (-) 666 WP_000008113.1 CPBP family intramembrane glutamic endopeptidase -
  QN325_RS00905 (QN325_00905) - 167306..167761 (-) 456 WP_000905673.1 hypothetical protein -
  QN325_RS00910 (QN325_00910) - 167802..167939 (-) 138 WP_001865900.1 hypothetical protein -
  QN325_RS00915 (QN325_00915) - 167998..168204 (-) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  QN325_RS00920 (QN325_00920) - 168356..169549 (-) 1194 WP_000047534.1 acetate kinase -
  QN325_RS00925 (QN325_00925) comYH 169581..170555 (-) 975 WP_001008574.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14774.80 Da        Isoelectric Point: 7.0189

>NTDB_id=885249 QN325_RS00860 WP_000282447.1 161551..161946(-) (ssbA) [Streptococcus agalactiae strain HU13/21]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=885249 QN325_RS00860 WP_000282447.1 161551..161946(-) (ssbA) [Streptococcus agalactiae strain HU13/21]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

60.526

87.023

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.018

86.26

0.397