Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RMP64_RS00875 Genome accession   NZ_CP135093
Coordinates   138563..138958 (+) Length   131 a.a.
NCBI ID   WP_002936524.1    Uniprot ID   -
Organism   Streptococcus suis strain 1652329     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 133563..143958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP64_RS00840 (RMP64_00840) pepA 134239..135300 (-) 1062 WP_024394708.1 glutamyl aminopeptidase -
  RMP64_RS00845 (RMP64_00845) - 135447..135731 (+) 285 WP_012774909.1 DUF4651 domain-containing protein -
  RMP64_RS00850 (RMP64_00850) - 135728..136048 (+) 321 WP_024386278.1 thioredoxin family protein -
  RMP64_RS00855 (RMP64_00855) - 136093..136434 (+) 342 WP_235607434.1 hypothetical protein -
  RMP64_RS00860 (RMP64_00860) - 136421..137053 (+) 633 WP_235607433.1 DUF1002 domain-containing protein -
  RMP64_RS00865 (RMP64_00865) ytpR 137072..137695 (+) 624 WP_002936532.1 YtpR family tRNA-binding protein -
  RMP64_RS00870 (RMP64_00870) - 137729..138508 (-) 780 WP_002936525.1 DUF2785 domain-containing protein -
  RMP64_RS00875 (RMP64_00875) ssbB 138563..138958 (+) 396 WP_002936524.1 single-stranded DNA-binding protein Machinery gene
  RMP64_RS00880 (RMP64_00880) - 139474..139641 (-) 168 WP_162841224.1 hypothetical protein -
  RMP64_RS00885 (RMP64_00885) groES 139838..140119 (+) 282 WP_014637330.1 co-chaperone GroES -
  RMP64_RS00890 (RMP64_00890) groL 140130..141752 (+) 1623 WP_024394710.1 chaperonin GroEL -
  RMP64_RS00895 (RMP64_00895) rpsL 141984..142397 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  RMP64_RS00900 (RMP64_00900) rpsG 142414..142884 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14876.76 Da        Isoelectric Point: 5.0026

>NTDB_id=885023 RMP64_RS00875 WP_002936524.1 138563..138958(+) (ssbB) [Streptococcus suis strain 1652329]
MYNKVILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGNKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNAGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=885023 RMP64_RS00875 WP_002936524.1 138563..138958(+) (ssbB) [Streptococcus suis strain 1652329]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACCCCTAACGGCAAAAATCTGAC
CCGTGTTACTGTCGCAGTCAACCGCCGTTTTAAGACGGAAAATGGCGAACGTGAAGCAGATTTTCTTAATGTCATTTTCT
GGGGCAAACTGGCGGAAACGCTTGTTTCCTATGGTAATAAAGGTAGTCTAATTTCCATTGATGGTGAATTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAAATCTTAGGACAATCCTTCCAGCTGCTCGAAAGTCGGGCCCA
ACGTGCTATGCGTGAAAATAATGCTGGCGATGATCTAGCTGATTTGGTCTTAGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae R6

73.282

100

0.733
  ssbB/cilA Streptococcus mitis SK321

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae D39

73.282

100

0.733
  ssbB/cilA Streptococcus mitis NCTC 12261

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

73.282

100

0.733
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389