Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RMQ61_RS00925 Genome accession   NZ_CP135090
Coordinates   149183..149578 (+) Length   131 a.a.
NCBI ID   WP_011921737.1    Uniprot ID   A0A0Z9FQS6
Organism   Streptococcus suis strain ID48908     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 144183..154578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS00895 (RMQ61_00895) - 145303..145587 (+) 285 WP_012774909.1 DUF4651 domain-containing protein -
  RMQ61_RS00900 (RMQ61_00900) - 145584..145904 (+) 321 WP_024386278.1 thioredoxin family protein -
  RMQ61_RS00905 (RMQ61_00905) - 145949..146905 (+) 957 WP_024403311.1 DUF1002 domain-containing protein -
  RMQ61_RS00910 (RMQ61_00910) ytpR 146924..147547 (+) 624 WP_313920917.1 YtpR family tRNA-binding protein -
  RMQ61_RS00915 (RMQ61_00915) tnpA 147733..148247 (+) 515 Protein_146 IS200/IS605 family transposase -
  RMQ61_RS00920 (RMQ61_00920) - 148346..149128 (-) 783 WP_313920918.1 DUF2785 domain-containing protein -
  RMQ61_RS00925 (RMQ61_00925) ssbA 149183..149578 (+) 396 WP_011921737.1 single-stranded DNA-binding protein Machinery gene
  RMQ61_RS00930 (RMQ61_00930) - 150099..150266 (-) 168 WP_172004969.1 hypothetical protein -
  RMQ61_RS00935 (RMQ61_00935) groES 150463..150744 (+) 282 WP_014637330.1 co-chaperone GroES -
  RMQ61_RS00940 (RMQ61_00940) groL 150756..152378 (+) 1623 WP_024393522.1 chaperonin GroEL -
  RMQ61_RS00945 (RMQ61_00945) rpsL 152610..153023 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  RMQ61_RS00950 (RMQ61_00950) rpsG 153040..153510 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14868.73 Da        Isoelectric Point: 5.0026

>NTDB_id=884971 RMQ61_RS00925 WP_011921737.1 149183..149578(+) (ssbA) [Streptococcus suis strain ID48908]
MYNKTILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=884971 RMQ61_RS00925 WP_011921737.1 149183..149578(+) (ssbA) [Streptococcus suis strain ID48908]
ATGTATAATAAAACAATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACAGTCGCAGTCAATCGCCGATTTAAGACTGAAAATGGTGAACGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGCAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGTAGCAACCACTATGTGACAGAGATTTTGGGACAATCGTTCCAGTTGCTCGAAAGTCGCGCTCA
ACGTGCCATGCGTGAAAACAATACTGGCGATGACCTAGCAGATTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z9FQS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374