Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RMQ62_RS04940 Genome accession   NZ_CP135065
Coordinates   1043607..1044002 (-) Length   131 a.a.
NCBI ID   WP_024384197.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1038607..1049002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS04915 (RMQ62_04915) rpsG 1039853..1040323 (-) 471 WP_002940031.1 30S ribosomal protein S7 -
  RMQ62_RS04920 (RMQ62_04920) rpsL 1040340..1040753 (-) 414 WP_002940030.1 30S ribosomal protein S12 -
  RMQ62_RS04925 (RMQ62_04925) groL 1040984..1042606 (-) 1623 WP_024393522.1 chaperonin GroEL -
  RMQ62_RS04930 (RMQ62_04930) groES 1042617..1042898 (-) 282 WP_105178932.1 co-chaperone GroES -
  RMQ62_RS04935 (RMQ62_04935) - 1043096..1043383 (+) 288 WP_105249085.1 hypothetical protein -
  RMQ62_RS04940 (RMQ62_04940) ssbA 1043607..1044002 (-) 396 WP_024384197.1 single-stranded DNA-binding protein Machinery gene
  RMQ62_RS04945 (RMQ62_04945) - 1044068..1044847 (+) 780 WP_313741730.1 DUF2785 domain-containing protein -
  RMQ62_RS04950 (RMQ62_04950) ytpR 1044880..1045503 (-) 624 WP_313680577.1 YtpR family tRNA-binding protein -
  RMQ62_RS04955 (RMQ62_04955) - 1045522..1046478 (-) 957 WP_136670728.1 DUF1002 domain-containing protein -
  RMQ62_RS04960 (RMQ62_04960) - 1046522..1046842 (-) 321 WP_024388908.1 thioredoxin family protein -
  RMQ62_RS04965 (RMQ62_04965) - 1046839..1047123 (-) 285 WP_015646299.1 DUF4651 domain-containing protein -
  RMQ62_RS04970 (RMQ62_04970) pepA 1047817..1048878 (+) 1062 WP_024399998.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14895.76 Da        Isoelectric Point: 5.0026

>NTDB_id=884718 RMQ62_RS04940 WP_024384197.1 1043607..1044002(-) (ssbA) [Streptococcus suis strain ID24665]
MYNKTILIGRLTAQPELTQTPNGKNLTRVTIAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGNTFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=884718 RMQ62_RS04940 WP_024384197.1 1043607..1044002(-) (ssbA) [Streptococcus suis strain ID24665]
ATGTATAATAAAACAATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACCCCTAACGGTAAAAATTTGAC
TCGTGTAACCATTGCAGTTAATAGACGATTTAAGACAGAAAATGGTGAACGTGAGGCAGATTTTCTCAATGTTATTTTCT
GGGGAAAACTGGCGGAAACACTTGTTTCCTATGGTAGCAAGGGCAGTCTGATTTCTATTGACGGTGAGTTGCGTACCCGT
AAATACGAAAAAGACGGCAGCAACCACTATGTGACGGAAATCTTGGGCAATACCTTCCAGTTGCTCGAAAGCCGCGCCCA
ACGTGCCATGCGTGAAAACAATACTGGCGATGACCTAGCTGACTTGGTTCTGGAAGAGGAGGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae TIGR4

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374