Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RND68_RS04590 | Genome accession | NZ_CP134882 |
| Coordinates | 881397..881825 (+) | Length | 142 a.a. |
| NCBI ID | WP_000934782.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain 10-5-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 876397..886825
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RND68_RS04535 (RND68_04535) | - | 876880..877554 (-) | 675 | WP_000775189.1 | ImmA/IrrE family metallo-endopeptidase | - |
| RND68_RS04540 (RND68_04540) | - | 877571..877903 (-) | 333 | WP_001055142.1 | helix-turn-helix domain-containing protein | - |
| RND68_RS04545 (RND68_04545) | - | 878166..878360 (+) | 195 | WP_000108121.1 | helix-turn-helix transcriptional regulator | - |
| RND68_RS04550 (RND68_04550) | - | 878360..879124 (+) | 765 | WP_031880731.1 | phage antirepressor KilAC domain-containing protein | - |
| RND68_RS04555 (RND68_04555) | - | 879141..879335 (+) | 195 | WP_001148857.1 | hypothetical protein | - |
| RND68_RS04560 (RND68_04560) | - | 879517..879747 (-) | 231 | WP_000395455.1 | hypothetical protein | - |
| RND68_RS04565 (RND68_04565) | - | 879818..880039 (+) | 222 | WP_000594789.1 | hypothetical protein | - |
| RND68_RS04570 (RND68_04570) | - | 880032..880193 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| RND68_RS04575 (RND68_04575) | - | 880290..880550 (+) | 261 | WP_000291090.1 | DUF1108 family protein | - |
| RND68_RS04580 (RND68_04580) | - | 880560..880781 (+) | 222 | WP_001077280.1 | DUF2483 family protein | - |
| RND68_RS04585 (RND68_04585) | - | 880774..881397 (+) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| RND68_RS04590 (RND68_04590) | ssbA | 881397..881825 (+) | 429 | WP_000934782.1 | single-stranded DNA-binding protein | Machinery gene |
| RND68_RS04595 (RND68_04595) | - | 881839..882508 (+) | 670 | Protein_906 | putative HNHc nuclease | - |
| RND68_RS04600 (RND68_04600) | - | 882508..883272 (+) | 765 | WP_000240900.1 | AP2 domain-containing protein | - |
| RND68_RS04605 (RND68_04605) | - | 883327..883734 (+) | 408 | WP_001816890.1 | HNH endonuclease | - |
| RND68_RS04610 (RND68_04610) | - | 883727..884449 (+) | 723 | WP_000031113.1 | helix-turn-helix domain-containing protein | - |
| RND68_RS04615 (RND68_04615) | - | 884459..885238 (+) | 780 | WP_000803056.1 | ATP-binding protein | - |
| RND68_RS04620 (RND68_04620) | - | 885232..885393 (+) | 162 | WP_000237153.1 | hypothetical protein | - |
| RND68_RS04625 (RND68_04625) | - | 885406..885627 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| RND68_RS04630 (RND68_04630) | - | 885638..886042 (+) | 405 | WP_000049795.1 | DUF1064 domain-containing protein | - |
| RND68_RS04635 (RND68_04635) | - | 886047..886232 (+) | 186 | WP_001187263.1 | DUF3113 family protein | - |
| RND68_RS04640 (RND68_04640) | - | 886233..886501 (+) | 269 | Protein_915 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15980.48 Da Isoelectric Point: 5.8724
>NTDB_id=884296 RND68_RS04590 WP_000934782.1 881397..881825(+) (ssbA) [Staphylococcus aureus strain 10-5-1]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=884296 RND68_RS04590 WP_000934782.1 881397..881825(+) (ssbA) [Staphylococcus aureus strain 10-5-1]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.721 |
100 |
0.711 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
74.648 |
0.437 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.657 |
100 |
0.43 |
| ssbA | Streptococcus mutans UA159 |
41.549 |
100 |
0.415 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.141 |
100 |
0.401 |