Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RH061_RS21790 Genome accession   NZ_CP134494
Coordinates   4365816..4366226 (-) Length   136 a.a.
NCBI ID   WP_311072853.1    Uniprot ID   -
Organism   Mesobacillus jeotgali strain PS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4360816..4371226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RH061_RS21775 (RH061_21775) - 4361912..4364737 (+) 2826 WP_311072850.1 DEAD/DEAH box helicase -
  RH061_RS21780 (RH061_21780) - 4364776..4365336 (-) 561 WP_311072851.1 hypothetical protein -
  RH061_RS21785 (RH061_21785) - 4365617..4365823 (-) 207 WP_311072852.1 hypothetical protein -
  RH061_RS21790 (RH061_21790) ssbB 4365816..4366226 (-) 411 WP_311072853.1 single-stranded DNA-binding protein Machinery gene
  RH061_RS21795 (RH061_21795) - 4366487..4366924 (+) 438 WP_311072854.1 YwpF-like family protein -
  RH061_RS21800 (RH061_21800) - 4367010..4367309 (-) 300 WP_311072855.1 hypothetical protein -
  RH061_RS21805 (RH061_21805) - 4367559..4367720 (-) 162 WP_311072856.1 hypothetical protein -
  RH061_RS21810 (RH061_21810) - 4367788..4368027 (-) 240 Protein_4252 hotdog domain-containing protein -
  RH061_RS21815 (RH061_21815) - 4368176..4368409 (-) 234 WP_311072857.1 type II toxin-antitoxin system HicA family toxin -
  RH061_RS21820 (RH061_21820) - 4368402..4368824 (-) 423 WP_311076498.1 hypothetical protein -
  RH061_RS21825 (RH061_21825) fabZ 4369405..4369827 (-) 423 WP_311072858.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RH061_RS21830 (RH061_21830) - 4369917..4370180 (-) 264 WP_311072859.1 DNA-directed RNA polymerase subunit beta -
  RH061_RS21835 (RH061_21835) - 4370200..4371048 (-) 849 WP_311072860.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15111.09 Da        Isoelectric Point: 9.4327

>NTDB_id=880454 RH061_RS21790 WP_311072853.1 4365816..4366226(-) (ssbB) [Mesobacillus jeotgali strain PS1]
MINQVTLVGRLTKDPDLRYTPDGKAVSNITLAVNRHYKNASGEIEADFVHCILWGKTAENTVNYCKKGAVLGVTGRIQTR
NYDNQEGKRVYVTEVVAEGVRFLSSKPAGTRETTQQAPQAPRQPQPVPQREELPFA

Nucleotide


Download         Length: 411 bp        

>NTDB_id=880454 RH061_RS21790 WP_311072853.1 4365816..4366226(-) (ssbB) [Mesobacillus jeotgali strain PS1]
GTGATCAATCAAGTTACACTAGTCGGCAGACTGACTAAGGATCCAGACCTCAGGTACACTCCTGATGGCAAGGCAGTATC
AAATATTACGCTTGCTGTAAACCGGCATTACAAAAATGCCAGCGGGGAAATCGAAGCTGATTTTGTCCACTGCATCCTCT
GGGGCAAGACGGCCGAGAACACGGTGAATTACTGTAAAAAAGGAGCAGTGCTAGGTGTCACTGGTCGAATCCAGACGAGA
AACTATGATAACCAGGAAGGCAAACGTGTCTATGTGACAGAAGTGGTTGCAGAAGGAGTCAGATTTTTGAGCTCAAAACC
TGCGGGAACTAGGGAGACGACACAGCAGGCTCCTCAAGCACCACGGCAGCCTCAGCCTGTTCCACAAAGAGAGGAGCTTC
CTTTTGCATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

70.093

78.676

0.551
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.208

77.941

0.493
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

85.294

0.485
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.912

100

0.419
  ssbB/cilA Streptococcus mitis NCTC 12261

41.912

100

0.419
  ssbB/cilA Streptococcus pneumoniae Rx1

41.176

100

0.412
  ssbB/cilA Streptococcus pneumoniae D39

41.176

100

0.412
  ssbB/cilA Streptococcus pneumoniae R6

41.176

100

0.412
  ssbB/cilA Streptococcus mitis SK321

41.176

100

0.412
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.481

99.265

0.412
  ssbA Streptococcus mutans UA159

38.971

100

0.39