Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RJW51_RS05650 Genome accession   NZ_CP134491
Coordinates   1129646..1130041 (-) Length   131 a.a.
NCBI ID   WP_172089536.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1124646..1135041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS05630 (RJW51_05615) rpsG 1125960..1126430 (-) 471 WP_002940031.1 30S ribosomal protein S7 -
  RJW51_RS05635 (RJW51_05620) rpsL 1126447..1126860 (-) 414 WP_002940030.1 30S ribosomal protein S12 -
  RJW51_RS05640 (RJW51_05625) groL 1127090..1128712 (-) 1623 WP_172040751.1 chaperonin GroEL -
  RJW51_RS05645 (RJW51_05630) groES 1128804..1129085 (-) 282 WP_024399882.1 co-chaperone GroES -
  RJW51_RS05650 (RJW51_05635) ssbA 1129646..1130041 (-) 396 WP_172089536.1 single-stranded DNA-binding protein Machinery gene
  RJW51_RS05655 (RJW51_05640) - 1130120..1131052 (+) 933 WP_172089535.1 alpha/beta fold hydrolase -
  RJW51_RS05660 (RJW51_05645) ytpR 1131121..1131744 (-) 624 WP_172089534.1 YtpR family tRNA-binding protein -
  RJW51_RS05665 (RJW51_05650) - 1131763..1132719 (-) 957 WP_172040743.1 DUF1002 domain-containing protein -
  RJW51_RS05670 (RJW51_05655) - 1132764..1133084 (-) 321 WP_172040741.1 thioredoxin family protein -
  RJW51_RS05675 (RJW51_05660) - 1133081..1133365 (-) 285 WP_002936537.1 DUF4651 domain-containing protein -
  RJW51_RS05680 (RJW51_05665) pepA 1133578..1134639 (+) 1062 WP_172089533.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14950.84 Da        Isoelectric Point: 5.0026

>NTDB_id=880366 RJW51_RS05650 WP_172089536.1 1129646..1130041(-) (ssbA) [Streptococcus parasuis strain 1628469]
MYNKVILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNIIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTNDDLADVILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=880366 RJW51_RS05650 WP_172089536.1 1129646..1130041(-) (ssbA) [Streptococcus parasuis strain 1628469]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTGACGGCCCAACCAGAACTGACTCAAACGCCAAATGGCAAAAATCTGAC
TCGTGTAACTGTCGCAGTCAATCGCCGATTTAAGACAGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATATTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTTTCTTATGGCAGCAAGGGCAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAGATTCTAGGTCAATCATTCCAATTGCTTGAAAGTCGTGCTCA
ACGTGCTATGCGTGAAAATAATACGAATGATGATTTGGCGGATGTGATTTTGGAAGAGGAAGAATTACCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

65.179

85.496

0.557
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389