Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RJW49_RS00835 Genome accession   NZ_CP134477
Coordinates   135439..135834 (+) Length   131 a.a.
NCBI ID   WP_074393518.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 130439..140834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS00805 (RJW49_00805) pepA 130469..131530 (-) 1062 WP_014735296.1 glutamyl aminopeptidase -
  RJW49_RS00810 (RJW49_00810) - 132328..132603 (+) 276 WP_014735297.1 DUF4651 domain-containing protein -
  RJW49_RS00815 (RJW49_00815) - 132609..132929 (+) 321 WP_014735298.1 thioredoxin family protein -
  RJW49_RS00820 (RJW49_00820) - 132974..133930 (+) 957 WP_014735299.1 DUF1002 domain-containing protein -
  RJW49_RS00825 (RJW49_00825) ytpR 133949..134572 (+) 624 WP_311048065.1 YtpR family tRNA-binding protein -
  RJW49_RS00830 (RJW49_00830) - 134605..135384 (-) 780 WP_074393517.1 DUF2785 domain-containing protein -
  RJW49_RS00835 (RJW49_00835) ssbB 135439..135834 (+) 396 WP_074393518.1 single-stranded DNA-binding protein Machinery gene
  RJW49_RS00840 (RJW49_00840) - 136254..136412 (-) 159 WP_014735303.1 hypothetical protein -
  RJW49_RS00845 (RJW49_00845) groES 136609..136890 (+) 282 WP_014735304.1 co-chaperone GroES -
  RJW49_RS00850 (RJW49_00850) groL 136901..138523 (+) 1623 WP_074393520.1 chaperonin GroEL -
  RJW49_RS00855 (RJW49_00855) rpsL 138755..139168 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  RJW49_RS00860 (RJW49_00860) rpsG 139185..139655 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14851.70 Da        Isoelectric Point: 5.0026

>NTDB_id=880202 RJW49_RS00835 WP_074393518.1 135439..135834(+) (ssbB) [Streptococcus suis strain NLS40]
MYNKVIAIGRLTAQPELTQTPNGKNLTRITVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=880202 RJW49_RS00835 WP_074393518.1 135439..135834(+) (ssbB) [Streptococcus suis strain NLS40]
ATGTATAATAAAGTTATTGCAATCGGTCGCTTGACGGCCCAACCCGAACTCACTCAAACCCCTAACGGCAAAAATCTGAC
CCGTATTACTGTCGCAGTCAATCGCCGATTTAAGACTGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCTATTGATGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAGATTTTGGGCCAATCTTTCCAATTACTAGAAAGCCGTGCCCA
ACGTGCCATGCGTGAAAACAATACTGGTGATGACCTAGCAGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382