Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   RJ609_RS19715 Genome accession   NZ_CP134269
Coordinates   4775930..4776340 (+) Length   136 a.a.
NCBI ID   WP_310978537.1    Uniprot ID   -
Organism   Lysobacter capsici strain XL2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4770930..4781340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ609_RS19700 (RJ609_19700) - 4771617..4773242 (+) 1626 WP_310978535.1 ATP-binding protein -
  RJ609_RS19705 (RJ609_19705) pilR 4773328..4774737 (+) 1410 WP_036104561.1 sigma-54 dependent transcriptional regulator Regulator
  RJ609_RS19710 (RJ609_19710) pilA2 4775289..4775708 (+) 420 WP_310978536.1 pilin Machinery gene
  RJ609_RS19715 (RJ609_19715) pilA2 4775930..4776340 (+) 411 WP_310978537.1 pilin Machinery gene
  RJ609_RS19720 (RJ609_19720) - 4776459..4778354 (+) 1896 WP_310978538.1 hypothetical protein -
  RJ609_RS19725 (RJ609_19725) - 4778403..4780310 (+) 1908 WP_310978539.1 hypothetical protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14173.14 Da        Isoelectric Point: 4.6682

>NTDB_id=879522 RJ609_RS19715 WP_310978537.1 4775930..4776340(+) (pilA2) [Lysobacter capsici strain XL2]
MKQHSGFTLIELMIVIAIIGILVSIALPAYLDYVARAKNSECLNVAASAKLSVSETAQDRGSLSLVNATNTGYSFNPSSY
CADIDIGARGVITATTSTPNSSVVFTLRPTSAAGSLEWDCSVPGGTDLTLVPAECR

Nucleotide


Download         Length: 411 bp        

>NTDB_id=879522 RJ609_RS19715 WP_310978537.1 4775930..4776340(+) (pilA2) [Lysobacter capsici strain XL2]
ATGAAACAACATTCGGGCTTCACACTGATCGAGCTGATGATCGTGATCGCGATCATCGGCATTCTTGTTAGCATCGCTTT
GCCGGCTTACCTGGACTACGTCGCCCGGGCCAAGAACAGCGAATGCCTTAACGTGGCCGCTTCGGCCAAGCTGTCGGTCT
CGGAAACCGCCCAGGATCGGGGCTCACTCAGCCTGGTCAATGCAACCAATACCGGCTACAGCTTCAACCCCTCGTCGTAT
TGCGCCGATATCGATATCGGGGCGCGCGGTGTGATCACCGCAACCACCTCGACTCCCAATTCTTCGGTCGTGTTCACCTT
GCGTCCGACCTCGGCGGCCGGCTCCCTCGAATGGGATTGCAGCGTTCCTGGCGGAACCGATCTGACATTGGTACCGGCAG
AATGCAGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

49.64

100

0.507
  pilA2 Legionella pneumophila strain ERS1305867

48.921

100

0.5
  pilA Ralstonia pseudosolanacearum GMI1000

37.195

100

0.449
  comP Acinetobacter baylyi ADP1

40.541

100

0.441
  pilA/pilA1 Eikenella corrodens VA1

36.601

100

0.412
  pilE Neisseria gonorrhoeae strain FA1090

38.028

100

0.397
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.879

100

0.382
  pilE Neisseria gonorrhoeae MS11

39.535

94.853

0.375
  pilA/pilAII Pseudomonas stutzeri DSM 10701

35.714

100

0.368
  pilA Glaesserella parasuis strain SC1401

36.567

98.529

0.36