Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   RIN70_RS01180 Genome accession   NZ_CP134147
Coordinates   204271..204675 (+) Length   134 a.a.
NCBI ID   WP_134974548.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 199271..209675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS01155 (RIN70_01155) - 200262..201365 (+) 1104 WP_155124981.1 glycosyl hydrolase family 8 -
  RIN70_RS01160 (RIN70_01160) - 201585..201974 (+) 390 WP_049505981.1 DUF1033 family protein -
  RIN70_RS01165 (RIN70_01165) comYA 202062..203003 (+) 942 WP_155124982.1 competence type IV pilus ATPase ComGA Machinery gene
  RIN70_RS01170 (RIN70_01170) comYB 202936..203967 (+) 1032 WP_195623587.1 competence type IV pilus assembly protein ComGB Machinery gene
  RIN70_RS01175 (RIN70_01175) comYC 203964..204281 (+) 318 WP_023919650.1 competence type IV pilus major pilin ComGC Machinery gene
  RIN70_RS01180 (RIN70_01180) comYD 204271..204675 (+) 405 WP_134974548.1 competence type IV pilus minor pilin ComGD Machinery gene
  RIN70_RS01185 (RIN70_01185) comGE 204641..204928 (+) 288 WP_049472874.1 competence type IV pilus minor pilin ComGE -
  RIN70_RS01190 (RIN70_01190) comGF/cglF 204918..205370 (+) 453 WP_049472872.1 competence type IV pilus minor pilin ComGF Machinery gene
  RIN70_RS01195 (RIN70_01195) comGG 205357..205791 (+) 435 WP_313790620.1 competence type IV pilus minor pilin ComGG -
  RIN70_RS01200 (RIN70_01200) comYH 205822..206775 (+) 954 WP_118397210.1 class I SAM-dependent methyltransferase Machinery gene
  RIN70_RS01205 (RIN70_01205) - 206827..208020 (+) 1194 WP_003019073.1 acetate kinase -
  RIN70_RS01210 (RIN70_01210) - 208093..208824 (+) 732 WP_049483596.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15192.51 Da        Isoelectric Point: 9.7796

>NTDB_id=878839 RIN70_RS01180 WP_134974548.1 204271..204675(+) (comYD) [Streptococcus parasanguinis strain 30.8.10]
MQIKAFTLVETLLTLMIVSFIYLGLSGSIRTSFQQVEEKVFFAEFEHLYQESQKIALARQTELDVEVTARKIQTPYQTVE
IPDSVILQDPKTIRLDRAGGNSSLANVHFQTQRGVVTYQLSLGNGKIKKSIRSR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=878839 RIN70_RS01180 WP_134974548.1 204271..204675(+) (comYD) [Streptococcus parasanguinis strain 30.8.10]
TTGCAGATTAAGGCCTTCACCTTGGTGGAGACCCTTTTGACCTTGATGATCGTCAGTTTTATCTATCTGGGCTTATCGGG
ATCGATCAGGACGAGCTTTCAGCAGGTGGAAGAAAAAGTATTTTTTGCAGAGTTTGAACACCTCTATCAAGAAAGTCAGA
AGATAGCACTGGCAAGGCAAACGGAATTGGATGTTGAAGTGACTGCAAGGAAGATTCAAACGCCCTACCAGACAGTGGAG
ATTCCTGATTCTGTCATTTTGCAAGATCCTAAAACCATTCGTTTAGACCGTGCAGGTGGCAATTCATCCCTGGCCAATGT
TCACTTTCAGACACAGAGAGGAGTGGTGACCTATCAACTGTCGCTTGGAAATGGGAAAATTAAAAAAAGCATCCGTTCCC
GCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

50

97.015

0.485
  comGD/cglD Streptococcus mitis NCTC 12261

48.837

96.269

0.47
  comGD/cglD Streptococcus pneumoniae Rx1

48.819

94.776

0.463
  comGD/cglD Streptococcus pneumoniae D39

48.819

94.776

0.463
  comGD/cglD Streptococcus pneumoniae R6

48.819

94.776

0.463
  comGD/cglD Streptococcus mitis SK321

48.819

94.776

0.463
  comGD/cglD Streptococcus pneumoniae TIGR4

48.031

94.776

0.455
  comYD Streptococcus mutans UA140

44.615

97.015

0.433
  comYD Streptococcus mutans UA159

44.615

97.015

0.433