Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   RIN70_RS01170 Genome accession   NZ_CP134147
Coordinates   202936..203967 (+) Length   343 a.a.
NCBI ID   WP_195623587.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 197936..208967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS01140 (RIN70_01140) - 198012..198800 (+) 789 WP_195623581.1 hypothetical protein -
  RIN70_RS01145 (RIN70_01145) - 198810..198950 (+) 141 WP_003004308.1 hypothetical protein -
  RIN70_RS01150 (RIN70_01150) - 198943..200253 (+) 1311 WP_195423844.1 glycosyltransferase -
  RIN70_RS01155 (RIN70_01155) - 200262..201365 (+) 1104 WP_155124981.1 glycosyl hydrolase family 8 -
  RIN70_RS01160 (RIN70_01160) - 201585..201974 (+) 390 WP_049505981.1 DUF1033 family protein -
  RIN70_RS01165 (RIN70_01165) comYA 202062..203003 (+) 942 WP_155124982.1 competence type IV pilus ATPase ComGA Machinery gene
  RIN70_RS01170 (RIN70_01170) comYB 202936..203967 (+) 1032 WP_195623587.1 competence type IV pilus assembly protein ComGB Machinery gene
  RIN70_RS01175 (RIN70_01175) comYC 203964..204281 (+) 318 WP_023919650.1 competence type IV pilus major pilin ComGC Machinery gene
  RIN70_RS01180 (RIN70_01180) comYD 204271..204675 (+) 405 WP_134974548.1 competence type IV pilus minor pilin ComGD Machinery gene
  RIN70_RS01185 (RIN70_01185) comGE 204641..204928 (+) 288 WP_049472874.1 competence type IV pilus minor pilin ComGE -
  RIN70_RS01190 (RIN70_01190) comGF/cglF 204918..205370 (+) 453 WP_049472872.1 competence type IV pilus minor pilin ComGF Machinery gene
  RIN70_RS01195 (RIN70_01195) comGG 205357..205791 (+) 435 WP_313790620.1 competence type IV pilus minor pilin ComGG -
  RIN70_RS01200 (RIN70_01200) comYH 205822..206775 (+) 954 WP_118397210.1 class I SAM-dependent methyltransferase Machinery gene
  RIN70_RS01205 (RIN70_01205) - 206827..208020 (+) 1194 WP_003019073.1 acetate kinase -
  RIN70_RS01210 (RIN70_01210) - 208093..208824 (+) 732 WP_049483596.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 39366.34 Da        Isoelectric Point: 9.6431

>NTDB_id=878837 RIN70_RS01170 WP_195623587.1 202936..203967(+) (comYB) [Streptococcus parasanguinis strain 30.8.10]
MSWLNRDISSWLRHKPKKLSTTKQKQIIELFLNLYSSGFHLSEIVDFLDRSHLVESHLVSQMRADLSRGRSFSEMMAGIG
FSDAVTTQLSLAELHGNLALSLEKISAYLENMRKVKKKLIEVSTYPLILLGFLILIMLGLRNYLLPQMDAQNIGTQLISS
FPQLFLALVAGIVVLFLFSFLYYRKSSKIKVFRSLSHLPFGKGMIQAYLTAYYAREWGNLIGQGLELSQIFTMMQEQKSQ
LFQEIGRDLVLSLDRGQSFSETVGGYSFFKKELPLMIEYGEVKSKLGSELEIYAEKTWEDFFRRVHKAMNVIQPLVFVFV
ALVIVLLYAAMLLPIYQNMEVHL

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=878837 RIN70_RS01170 WP_195623587.1 202936..203967(+) (comYB) [Streptococcus parasanguinis strain 30.8.10]
ATCTCTTGGCTCAATCGGGATATATCCAGCTGGCTCAGGCACAAGCCGAAAAAATTATCTACAACTAAACAAAAGCAAAT
CATTGAATTGTTTTTGAATCTTTATTCGAGTGGTTTTCATCTGTCTGAGATTGTTGATTTTTTGGATCGTTCCCACCTAG
TAGAGAGTCATTTGGTCTCCCAGATGCGAGCAGATCTCTCTCGGGGTCGGAGTTTTTCAGAGATGATGGCGGGGATCGGT
TTTTCAGATGCGGTCACGACGCAGCTGTCTCTCGCTGAGCTCCATGGAAATCTTGCATTGAGCTTGGAGAAAATCAGTGC
TTACCTAGAAAATATGCGCAAGGTCAAGAAAAAGTTGATCGAAGTTAGCACTTATCCTCTTATCTTACTTGGGTTTTTAA
TTTTGATTATGCTAGGCCTGCGCAATTATTTGCTCCCTCAAATGGATGCACAAAATATTGGTACGCAATTGATCAGTTCC
TTTCCCCAACTCTTTTTGGCGCTCGTAGCGGGGATAGTGGTTCTCTTCTTATTCAGCTTTCTCTATTATCGAAAATCTAG
CAAGATCAAAGTTTTTAGAAGCTTGTCCCATCTTCCTTTCGGGAAAGGCATGATTCAAGCTTATTTGACAGCCTATTATG
CCAGAGAATGGGGCAATCTGATTGGGCAAGGATTGGAGCTGTCTCAGATTTTTACCATGATGCAGGAGCAAAAATCCCAG
CTTTTCCAAGAGATTGGAAGAGACTTAGTTCTTTCTTTAGACCGCGGTCAATCCTTTTCAGAGACGGTCGGGGGATATTC
TTTTTTCAAAAAAGAATTGCCGCTTATGATTGAATATGGTGAGGTCAAATCAAAGCTTGGAAGTGAGCTAGAGATCTACG
CTGAAAAAACATGGGAAGACTTCTTTCGTCGGGTCCACAAGGCCATGAATGTGATACAACCCTTGGTCTTTGTCTTTGTA
GCTCTTGTGATTGTCTTACTTTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGGTTCATTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(214-334)

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

65.598

100

0.656
  comGB/cglB Streptococcus mitis NCTC 12261

66.369

97.959

0.65
  comGB/cglB Streptococcus mitis SK321

66.369

97.959

0.65
  comGB/cglB Streptococcus pneumoniae TIGR4

66.071

97.959

0.647
  comGB/cglB Streptococcus pneumoniae R6

66.071

97.959

0.647
  comGB/cglB Streptococcus pneumoniae Rx1

66.071

97.959

0.647
  comGB/cglB Streptococcus pneumoniae D39

66.071

97.959

0.647
  comYB Streptococcus mutans UA159

58.14

100

0.583
  comYB Streptococcus mutans UA140

58.14

100

0.583
  comGB Lactococcus lactis subsp. cremoris KW2

49.852

98.251

0.49