Detailed information NTG0878840

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: RIN70_RS01190
• Genome accession: NZ_CP134147
• Coordinates: 204918..205370 (+)
• Length: 150 a.a.
• NCBI ID: WP_049472872.1
• Uniprot ID: -
• Organism: Streptococcus parasanguinis strain 30.8.10
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 199918..210370

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIN70_RS01155 (RIN70_01155)	-	200262..201365 (+)	1104	WP_155124981.1	glycosyl hydrolase family 8	-
RIN70_RS01160 (RIN70_01160)	-	201585..201974 (+)	390	WP_049505981.1	DUF1033 family protein	-
RIN70_RS01165 (RIN70_01165)	comYA	202062..203003 (+)	942	WP_155124982.1	competence type IV pilus ATPase ComGA	Machinery gene
RIN70_RS01170 (RIN70_01170)	comYB	202936..203967 (+)	1032	WP_195623587.1	competence type IV pilus assembly protein ComGB	Machinery gene
RIN70_RS01175 (RIN70_01175)	comYC	203964..204281 (+)	318	WP_023919650.1	competence type IV pilus major pilin ComGC	Machinery gene
RIN70_RS01180 (RIN70_01180)	comYD	204271..204675 (+)	405	WP_134974548.1	competence type IV pilus minor pilin ComGD	Machinery gene
RIN70_RS01185 (RIN70_01185)	comGE	204641..204928 (+)	288	WP_049472874.1	competence type IV pilus minor pilin ComGE	-
RIN70_RS01190 (RIN70_01190)	comGF/cglF	204918..205370 (+)	453	WP_049472872.1	competence type IV pilus minor pilin ComGF	Machinery gene
RIN70_RS01195 (RIN70_01195)	comGG	205357..205791 (+)	435	WP_313790620.1	competence type IV pilus minor pilin ComGG	-
RIN70_RS01200 (RIN70_01200)	comYH	205822..206775 (+)	954	WP_118397210.1	class I SAM-dependent methyltransferase	Machinery gene
RIN70_RS01205 (RIN70_01205)	-	206827..208020 (+)	1194	WP_003019073.1	acetate kinase	-
RIN70_RS01210 (RIN70_01210)	-	208093..208824 (+)	732	WP_049483596.1	CPBP family intramembrane glutamic endopeptidase	-
RIN70_RS01215 (RIN70_01215)	folP	208987..209937 (+)	951	WP_049523765.1	dihydropteroate synthase	-

Sequence

Protein

• Length: 150 a.a.
• Molecular weight: 17296.74 Da
• Isoelectric Point: 6.2263

>NTDB_id=878840 RIN70_RS01190 WP_049472872.1 204918..205370(+) (comGF/cglF) [Streptococcus parasanguinis strain 30.8.10]
MWNKGKVKAFTLLEALVALLVLSGGVLVFQGLTKLLHAELDYQAHQKQEEWILFQQQLQVELDRSHFEKVADNHIYLVQD
QKPIAIGQSKGDDIRKTDDKGRGYQPMISGVRSSQIWQEGELLHLRLNFEEGLEREYVYHVVPAIQNEKS

Nucleotide

• Length: 453 bp

>NTDB_id=878840 RIN70_RS01190 WP_049472872.1 204918..205370(+) (comGF/cglF) [Streptococcus parasanguinis strain 30.8.10]
ATGTGGAATAAAGGTAAGGTCAAGGCCTTTACCCTGCTCGAAGCCTTGGTCGCTCTCTTGGTCCTTAGTGGGGGTGTGTT
GGTCTTTCAAGGCTTGACTAAGCTCCTGCATGCTGAATTGGACTACCAAGCACACCAAAAGCAGGAGGAATGGATACTTT
TTCAGCAACAATTGCAGGTGGAATTGGACCGGAGTCATTTTGAAAAAGTAGCGGACAATCATATCTACTTGGTTCAGGAT
CAAAAACCAATTGCTATTGGCCAATCTAAAGGAGATGATATCCGAAAAACAGATGATAAGGGCAGAGGCTATCAGCCTAT
GATTTCAGGGGTTCGCTCTAGCCAAATTTGGCAGGAGGGAGAGCTCCTTCATCTGCGGTTGAATTTTGAAGAAGGTCTAG
AAAGGGAGTATGTCTACCATGTGGTACCAGCGATACAAAATGAAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (43-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus mitis NCTC 12261	55.396	92.667	0.513
comGF/cglF	Streptococcus mitis SK321	54.676	92.667	0.507
comGF/cglF	Streptococcus pneumoniae Rx1	55.882	90.667	0.507
comGF/cglF	Streptococcus pneumoniae D39	55.882	90.667	0.507
comGF/cglF	Streptococcus pneumoniae R6	55.882	90.667	0.507
comGF/cglF	Streptococcus pneumoniae TIGR4	55.882	90.667	0.507
comYF	Streptococcus mutans UA159	42.647	90.667	0.387
comYF	Streptococcus mutans UA140	42.647	90.667	0.387
comGF	Lactococcus lactis subsp. cremoris KW2	38.298	94	0.36