Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | RIN70_RS01200 | Genome accession | NZ_CP134147 |
| Coordinates | 205822..206775 (+) | Length | 317 a.a. |
| NCBI ID | WP_118397210.1 | Uniprot ID | - |
| Organism | Streptococcus parasanguinis strain 30.8.10 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 200822..211775
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RIN70_RS01160 (RIN70_01160) | - | 201585..201974 (+) | 390 | WP_049505981.1 | DUF1033 family protein | - |
| RIN70_RS01165 (RIN70_01165) | comYA | 202062..203003 (+) | 942 | WP_155124982.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RIN70_RS01170 (RIN70_01170) | comYB | 202936..203967 (+) | 1032 | WP_195623587.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| RIN70_RS01175 (RIN70_01175) | comYC | 203964..204281 (+) | 318 | WP_023919650.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RIN70_RS01180 (RIN70_01180) | comYD | 204271..204675 (+) | 405 | WP_134974548.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| RIN70_RS01185 (RIN70_01185) | comGE | 204641..204928 (+) | 288 | WP_049472874.1 | competence type IV pilus minor pilin ComGE | - |
| RIN70_RS01190 (RIN70_01190) | comGF/cglF | 204918..205370 (+) | 453 | WP_049472872.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| RIN70_RS01195 (RIN70_01195) | comGG | 205357..205791 (+) | 435 | WP_313790620.1 | competence type IV pilus minor pilin ComGG | - |
| RIN70_RS01200 (RIN70_01200) | comYH | 205822..206775 (+) | 954 | WP_118397210.1 | class I SAM-dependent methyltransferase | Machinery gene |
| RIN70_RS01205 (RIN70_01205) | - | 206827..208020 (+) | 1194 | WP_003019073.1 | acetate kinase | - |
| RIN70_RS01210 (RIN70_01210) | - | 208093..208824 (+) | 732 | WP_049483596.1 | CPBP family intramembrane glutamic endopeptidase | - |
| RIN70_RS01215 (RIN70_01215) | folP | 208987..209937 (+) | 951 | WP_049523765.1 | dihydropteroate synthase | - |
| RIN70_RS01220 (RIN70_01220) | - | 209938..211248 (+) | 1311 | WP_272144458.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35884.62 Da Isoelectric Point: 4.1970
>NTDB_id=878841 RIN70_RS01200 WP_118397210.1 205822..206775(+) (comYH) [Streptococcus parasanguinis strain 30.8.10]
MNFEKIEQAYTYLLENTQSIQNELSTNFYDALIEQNAMYLDGKTDLDIVKNNSKKLKELGLSKEEWRRAYQFLFMKAAQT
EPLQANHQFTPDAIGFIITFLIDQLAKSDQLDVLEVGSGTGNLAETIVNNSRLTIDYLGLEVDDLLIDLSASIADVMESS
VVFAQGDAVRPQVLKESDLIVSDLPIGYYPDDAIAQRYQVASSEGHTYAHHLMMEQALKYLKPQGVAIFLAPNNLLTSSQ
SDLLKAWLTDKAQLLAMLTLPESLFSNPAYAKTIFVLRKQEEESVQPFVYPFTDLQDQDQVVHFMESFQNWLKDSEI
MNFEKIEQAYTYLLENTQSIQNELSTNFYDALIEQNAMYLDGKTDLDIVKNNSKKLKELGLSKEEWRRAYQFLFMKAAQT
EPLQANHQFTPDAIGFIITFLIDQLAKSDQLDVLEVGSGTGNLAETIVNNSRLTIDYLGLEVDDLLIDLSASIADVMESS
VVFAQGDAVRPQVLKESDLIVSDLPIGYYPDDAIAQRYQVASSEGHTYAHHLMMEQALKYLKPQGVAIFLAPNNLLTSSQ
SDLLKAWLTDKAQLLAMLTLPESLFSNPAYAKTIFVLRKQEEESVQPFVYPFTDLQDQDQVVHFMESFQNWLKDSEI
Nucleotide
Download Length: 954 bp
>NTDB_id=878841 RIN70_RS01200 WP_118397210.1 205822..206775(+) (comYH) [Streptococcus parasanguinis strain 30.8.10]
ATGAATTTCGAAAAAATTGAACAAGCCTATACCTATCTATTAGAAAACACTCAAAGTATTCAAAATGAATTGTCGACCAA
CTTTTATGACGCCTTGATTGAACAAAATGCCATGTATTTGGATGGCAAGACAGATCTAGACATTGTTAAAAACAATAGCA
AAAAATTAAAAGAACTAGGTTTGAGTAAGGAAGAATGGCGCAGAGCCTACCAATTCCTTTTTATGAAAGCTGCTCAGACA
GAGCCTTTACAAGCGAATCACCAGTTCACACCAGATGCGATTGGTTTTATCATTACATTTTTGATCGATCAGTTGGCTAA
AAGCGACCAACTGGATGTCTTAGAAGTGGGAAGTGGAACCGGAAATCTCGCTGAGACTATTGTCAACAATAGCCGTCTCA
CGATTGATTACTTAGGATTGGAAGTAGATGATCTCTTGATTGATCTATCTGCTAGTATCGCAGATGTGATGGAGTCCAGT
GTTGTCTTTGCACAAGGCGATGCGGTTCGCCCACAAGTTTTGAAAGAAAGTGACTTGATCGTCAGTGATCTTCCAATTGG
TTATTATCCAGATGATGCGATTGCACAGCGCTATCAGGTAGCGAGCTCCGAAGGCCATACCTATGCTCATCACCTTATGA
TGGAACAGGCTCTGAAATACCTGAAACCTCAAGGAGTAGCCATCTTTTTAGCTCCAAACAACCTCTTGACGAGCTCTCAG
AGTGATCTGTTGAAAGCTTGGCTAACAGACAAGGCTCAACTCCTTGCCATGCTGACCTTGCCAGAATCTCTTTTTTCAAA
TCCGGCATATGCTAAGACGATTTTCGTCCTACGGAAACAAGAAGAAGAGTCTGTTCAGCCCTTTGTCTATCCGTTTACCG
ATCTCCAGGATCAAGACCAGGTGGTTCACTTTATGGAAAGTTTCCAAAACTGGTTAAAGGATAGTGAAATTTGA
ATGAATTTCGAAAAAATTGAACAAGCCTATACCTATCTATTAGAAAACACTCAAAGTATTCAAAATGAATTGTCGACCAA
CTTTTATGACGCCTTGATTGAACAAAATGCCATGTATTTGGATGGCAAGACAGATCTAGACATTGTTAAAAACAATAGCA
AAAAATTAAAAGAACTAGGTTTGAGTAAGGAAGAATGGCGCAGAGCCTACCAATTCCTTTTTATGAAAGCTGCTCAGACA
GAGCCTTTACAAGCGAATCACCAGTTCACACCAGATGCGATTGGTTTTATCATTACATTTTTGATCGATCAGTTGGCTAA
AAGCGACCAACTGGATGTCTTAGAAGTGGGAAGTGGAACCGGAAATCTCGCTGAGACTATTGTCAACAATAGCCGTCTCA
CGATTGATTACTTAGGATTGGAAGTAGATGATCTCTTGATTGATCTATCTGCTAGTATCGCAGATGTGATGGAGTCCAGT
GTTGTCTTTGCACAAGGCGATGCGGTTCGCCCACAAGTTTTGAAAGAAAGTGACTTGATCGTCAGTGATCTTCCAATTGG
TTATTATCCAGATGATGCGATTGCACAGCGCTATCAGGTAGCGAGCTCCGAAGGCCATACCTATGCTCATCACCTTATGA
TGGAACAGGCTCTGAAATACCTGAAACCTCAAGGAGTAGCCATCTTTTTAGCTCCAAACAACCTCTTGACGAGCTCTCAG
AGTGATCTGTTGAAAGCTTGGCTAACAGACAAGGCTCAACTCCTTGCCATGCTGACCTTGCCAGAATCTCTTTTTTCAAA
TCCGGCATATGCTAAGACGATTTTCGTCCTACGGAAACAAGAAGAAGAGTCTGTTCAGCCCTTTGTCTATCCGTTTACCG
ATCTCCAGGATCAAGACCAGGTGGTTCACTTTATGGAAAGTTTCCAAAACTGGTTAAAGGATAGTGAAATTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
62.222 |
99.369 |
0.618 |
| comYH | Streptococcus mutans UA140 |
62.222 |
99.369 |
0.618 |