Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TOL5_RS01730 Genome accession   NZ_AP024708
Coordinates   374674..375906 (-) Length   410 a.a.
NCBI ID   WP_042088565.1    Uniprot ID   -
Organism   Acinetobacter sp. Tol 5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 369674..380906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOL5_RS01705 (TOL5_03270) - 370937..371260 (+) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -
  TOL5_RS01710 (TOL5_03280) rlmB 371404..372156 (+) 753 WP_004826358.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  TOL5_RS01715 (TOL5_03290) - 372197..373117 (+) 921 WP_199934976.1 DMT family transporter -
  TOL5_RS01720 (TOL5_03300) coaE 373165..373764 (-) 600 WP_199934975.1 dephospho-CoA kinase -
  TOL5_RS22600 (TOL5_03310) pilD 373790..374671 (-) 882 WP_035300187.1 prepilin peptidase Machinery gene
  TOL5_RS01730 (TOL5_03320) pilC 374674..375906 (-) 1233 WP_042088565.1 type II secretion system F family protein Machinery gene
  TOL5_RS01735 (TOL5_03330) pilB 375934..377646 (-) 1713 WP_035300190.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TOL5_RS01740 (TOL5_03340) tpiA 377925..378719 (+) 795 WP_009584365.1 triose-phosphate isomerase -
  TOL5_RS01745 (TOL5_03350) secG 378729..379070 (+) 342 WP_004826367.1 preprotein translocase subunit SecG -
  TOL5_RS01770 (TOL5_03360) rimP 379865..380389 (+) 525 WP_004826368.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45235.77 Da        Isoelectric Point: 9.9329

>NTDB_id=87581 TOL5_RS01730 WP_042088565.1 374674..375906(-) (pilC) [Acinetobacter sp. Tol 5]
MAAKKAQMMPTFAYDGVDRKGIKVKGELPARNMALAKVMLRKQGITIKTIREKKKNIFEGLMKKGISTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMREVVLGIKSEVEGGNTFAGALRKYPRYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVIVVAIIVTIILMVKVVPVFQELFSSFGADLPAFTQLVVNMSNWMQKYWFIFLIMIGIIIT
AFLEAKKRSQKFRDFLDRTALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEQAVMKIREDVA
TGQQLNFAMRVSNKFPAMAVQMVAIGEESGALDAMLDKVASHFESEVDNAVDGLTSMMEPLIMAILGVIVGGLVIAMYLP
IFQMGSVVGG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=87581 TOL5_RS01730 WP_042088565.1 374674..375906(-) (pilC) [Acinetobacter sp. Tol 5]
ATGGCAGCTAAAAAAGCGCAAATGATGCCTACCTTTGCTTATGACGGGGTTGATCGTAAAGGAATCAAGGTCAAAGGAGA
ATTGCCTGCACGGAATATGGCACTTGCCAAAGTCATGTTGAGAAAGCAAGGCATTACCATTAAAACCATTCGAGAAAAGA
AAAAGAATATTTTCGAAGGCTTAATGAAGAAAGGAATATCAACTTTAGATATTACCATTTTTACCCGTCAACTTGCCACC
ATGATGAAAGCAGGTGTGCCCTTGGTGCAGAGTTTTGAAATTGTTGCTGAAGGTTTAGAAAATCCTTCTATGCGAGAAGT
GGTATTAGGCATTAAAAGTGAAGTTGAAGGCGGAAATACCTTTGCTGGCGCACTGAGAAAATATCCCCGCTACTTTGATA
ACTTGTTTTGCTCCCTAGTCGAGTCGGGTGAGCAATCAGGTGCTTTAGAGACTATGCTAGATCGTGTTGCGATCTATAAA
GAAAAAAGCGAATTATTAAAGCAAAAAATTAAAAAAGCCATGAAATATCCAATCTCAGTGATTGTGGTTGCAATTATTGT
CACCATTATTCTCATGGTTAAAGTTGTCCCGGTGTTTCAAGAGCTGTTCAGCTCTTTTGGTGCAGATTTACCAGCTTTTA
CTCAACTGGTGGTGAATATGTCCAACTGGATGCAGAAGTATTGGTTTATCTTTTTAATTATGATTGGCATCATTATCACT
GCTTTTTTAGAAGCCAAAAAGCGAAGTCAAAAATTTCGCGATTTTTTAGATAGAACCGCACTCAAACTGCCTATTTTTGG
AGATCTGGTCTATAAAGCGATTATTGCGCGTTATAGCCGTACCTTAGCCACCACCTTTGCGGCAGGGGTTCCCCTCATTG
AAGCACTAGAATCTACTGCGGGTGCAACCAACAATGTGGTTTACGAACAAGCTGTGATGAAAATTCGTGAAGATGTTGCC
ACAGGTCAACAACTGAATTTTGCCATGCGTGTCAGTAATAAATTTCCTGCTATGGCAGTGCAAATGGTGGCGATTGGAGA
AGAATCTGGTGCATTGGATGCGATGTTGGATAAAGTGGCTTCACATTTTGAAAGCGAAGTGGATAATGCGGTAGATGGTC
TCACCTCAATGATGGAGCCCTTAATTATGGCAATCTTAGGTGTAATCGTTGGCGGTTTGGTGATTGCAATGTATCTTCCA
ATTTTCCAAATGGGTTCAGTTGTTGGCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

86.52

99.512

0.861
  pilC Acinetobacter baylyi ADP1

84.559

99.512

0.841
  pilC Pseudomonas stutzeri DSM 10701

59.606

99.024

0.59
  pilC Legionella pneumophila strain ERS1305867

53.58

98.78

0.529
  pilG Neisseria gonorrhoeae MS11

46.985

97.073

0.456
  pilG Neisseria meningitidis 44/76-A

46.985

97.073

0.456
  pilC Vibrio cholerae strain A1552

42.157

99.512

0.42
  pilC Vibrio campbellii strain DS40M4

41.235

98.78

0.407
  pilC Thermus thermophilus HB27

37.905

97.805

0.371

Multiple sequence alignment