Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   TOL5_RS22600 Genome accession   NZ_AP024708
Coordinates   373790..374671 (-) Length   293 a.a.
NCBI ID   WP_035300187.1    Uniprot ID   -
Organism   Acinetobacter sp. Tol 5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 368790..379671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOL5_RS01705 (TOL5_03270) - 370937..371260 (+) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -
  TOL5_RS01710 (TOL5_03280) rlmB 371404..372156 (+) 753 WP_004826358.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  TOL5_RS01715 (TOL5_03290) - 372197..373117 (+) 921 WP_199934976.1 DMT family transporter -
  TOL5_RS01720 (TOL5_03300) coaE 373165..373764 (-) 600 WP_199934975.1 dephospho-CoA kinase -
  TOL5_RS22600 (TOL5_03310) pilD 373790..374671 (-) 882 WP_035300187.1 prepilin peptidase Machinery gene
  TOL5_RS01730 (TOL5_03320) pilC 374674..375906 (-) 1233 WP_042088565.1 type II secretion system F family protein Machinery gene
  TOL5_RS01735 (TOL5_03330) pilB 375934..377646 (-) 1713 WP_035300190.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TOL5_RS01740 (TOL5_03340) tpiA 377925..378719 (+) 795 WP_009584365.1 triose-phosphate isomerase -
  TOL5_RS01745 (TOL5_03350) secG 378729..379070 (+) 342 WP_004826367.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32726.06 Da        Isoelectric Point: 7.3721

>NTDB_id=87613 TOL5_RS22600 WP_035300187.1 373790..374671(-) (pilD) [Acinetobacter sp. Tol 5]
MNIFNDFLNLLNQSSTALYIVVGLVSLCVGSFLNVVIYRTPKMMEKEWRQEWQAECQLLAGSQQIVIDEEKLSLSQPAST
CPQCKTPIRWYQNIPVISWLALRGKCASCQNPISIRYPLVELLTAICSLTVVAVYGPTLQMVFGVLLTWVLITLTFIDFD
TQLLPDRFTLTLAAVGLGINSFEIYTTANAAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPL
IILLSSVVGAIIGIILLKIRKENIPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=87613 TOL5_RS22600 WP_035300187.1 373790..374671(-) (pilD) [Acinetobacter sp. Tol 5]
ATGAACATATTCAACGATTTTTTAAACCTTCTGAATCAATCATCGACTGCACTTTATATTGTTGTCGGTCTAGTCAGTCT
ATGTGTCGGTAGTTTCCTCAATGTGGTGATTTATCGCACACCAAAGATGATGGAAAAGGAATGGCGCCAAGAGTGGCAAG
CAGAATGTCAATTGCTTGCTGGTTCTCAACAGATCGTCATTGACGAAGAAAAACTGAGTCTGAGTCAACCAGCATCCACC
TGCCCACAATGTAAAACACCGATTCGCTGGTATCAAAATATCCCCGTGATCAGTTGGTTGGCGTTACGTGGTAAATGTGC
TTCATGTCAAAACCCCATCAGTATCCGCTATCCTTTGGTTGAACTACTGACAGCAATCTGCTCCTTAACCGTTGTTGCAG
TATATGGACCAACACTGCAAATGGTGTTTGGTGTATTGCTGACTTGGGTGCTGATTACTCTGACCTTTATTGATTTTGAT
ACACAATTACTACCTGATCGTTTTACCTTAACACTCGCGGCTGTGGGTTTAGGAATTAACTCATTTGAAATATATACCAC
GGCAAACGCTGCAATTTGGGGTTATATTATTGGTTTTCTTTGCCTATGGATTGTCTATTACCTGTTTAAAATCGTGACAG
GTAAGGAAGGCATGGGTTATGGTGACTTTAAGCTTCTTGCTGCACTGGGTGCTTGGATGGGACCGTTGATGTTGCCTTTA
ATTATCCTACTTTCTTCGGTTGTCGGGGCAATCATTGGCATCATCCTGTTAAAAATTCGTAAGGAAAATATTCCTTTTGC
TTTTGGACCTTATATCGCCATTGCAGGCTGGATTGCATTCTTATGGGGCGAACAAATCATGAAGATTTACTTAGGTCAAT
AA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-133)

Type IV leader peptidase family (Peptidase_A24)

(146-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

76.042

98.294

0.747
  pilD Acinetobacter nosocomialis M2

76.042

98.294

0.747
  pilD Vibrio campbellii strain DS40M4

54.317

94.881

0.515
  pilD Vibrio cholerae strain A1552

53.623

94.198

0.505
  pilD Neisseria gonorrhoeae MS11

44.326

96.246

0.427

Multiple sequence alignment