NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	RDV59_RS00215	Genome accession	NZ_CP133476
Coordinates	38655..39047 (-)	Length	130 a.a.
NCBI ID	WP_002885697.1	Uniprot ID	A0AB33ZFB8
Organism	Streptococcus salivarius strain LMG 11489
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 33655..44047

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV59_RS00175 (RDV59_00175)	dapD	33734..34432 (-)	699	WP_002886999.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
RDV59_RS00180 (RDV59_00180)	-	34518..35270 (-)	753	WP_038676849.1	HAD family hydrolase	-
RDV59_RS00185 (RDV59_00185)	-	35384..36223 (-)	840	WP_038676851.1	methyltransferase domain-containing protein	-
RDV59_RS00195 (RDV59_00195)	-	36645..36803 (+)	159	WP_038676853.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
RDV59_RS00200 (RDV59_00200)	-	36823..36990 (+)	168	WP_002885883.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
RDV59_RS00205 (RDV59_00205)	-	37038..37292 (+)	255	WP_038676855.1	hypothetical protein	-
RDV59_RS00210 (RDV59_00210)	tadA	37377..37895 (-)	519	WP_049553956.1	tRNA adenosine(34) deaminase TadA	-
RDV59_RS00215 (RDV59_00215)	ssbA	38655..39047 (-)	393	WP_002885697.1	single-stranded DNA-binding protein	Machinery gene
RDV59_RS00220 (RDV59_00220)	-	39476..40153 (-)	678	WP_002887005.1	CPBP family intramembrane glutamic endopeptidase	-
RDV59_RS00225 (RDV59_00225)	ytpR	40420..41043 (-)	624	WP_002885779.1	YtpR family tRNA-binding protein	-
RDV59_RS00230 (RDV59_00230)	-	41075..41599 (-)	525	WP_002885713.1	hypothetical protein	-
RDV59_RS00235 (RDV59_00235)	-	41603..41917 (-)	315	WP_002887006.1	thioredoxin family protein	-
RDV59_RS00240 (RDV59_00240)	-	41914..42198 (-)	285	WP_038677057.1	DUF4651 domain-containing protein	-
RDV59_RS00245 (RDV59_00245)	pepA	42298..43365 (+)	1068	WP_002887007.1	glutamyl aminopeptidase	-

Sequence

Protein

Download Length: 130 a.a. Molecular weight: 14759.67 Da Isoelectric Point: 5.9275

                                >NTDB_id=874628 RDV59_RS00215 WP_002885697.1 38655..39047(-) (ssbA) [Streptococcus salivarius strain LMG 11489]

MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR

KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLVLEEELPF

Nucleotide

Download Length: 393 bp

                                >NTDB_id=874628 RDV59_RS00215 WP_002885697.1 38655..39047(-) (ssbA) [Streptococcus salivarius strain LMG 11489]

ATGTATAACAAAGTTATTTTAATTGGACGTTTGACGGCGACTCCTGAAATGGTAAAAACTGCTAGCGATAGGTCTTTTAC

ACGTGTTACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT

GGGGGCGTTTGGCTGAGACCTTAGCATCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACTCGT

AAGTACGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA

GCGTGCTGTTAGGGAAAATAATCCTGATAATGACTTGGCTGACCTCGTCTTGGAAGAAGAACTTCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Streptococcus mutans UA159	80.916	100	0.815
ssbB/cilA	Streptococcus pneumoniae TIGR4	76.336	100	0.769
ssbB	Streptococcus sobrinus strain NIDR 6715-7	76.336	100	0.769
ssbB/cilA	Streptococcus mitis SK321	75.573	100	0.762
ssbB/cilA	Streptococcus pneumoniae R6	75.573	100	0.762
ssbB/cilA	Streptococcus pneumoniae Rx1	75.573	100	0.762
ssbB/cilA	Streptococcus pneumoniae D39	75.573	100	0.762
ssbB/cilA	Streptococcus mitis NCTC 12261	74.046	100	0.746
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	81.538	0.392
ssb	Latilactobacillus sakei subsp. sakei 23K	47.17	81.538	0.385

Detailed information NTG0874628