Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RDJ18_RS01605 Genome accession   NZ_CP133442
Coordinates   351573..351998 (+) Length   141 a.a.
NCBI ID   WP_000934780.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA191     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 340446..382435 351573..351998 within 0


Gene organization within MGE regions


Location: 340446..382435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ18_RS01495 (RDJ18_01495) - 340446..341651 (-) 1206 WP_309042846.1 tyrosine-type recombinase/integrase -
  RDJ18_RS01500 (RDJ18_01500) - 341777..341956 (+) 180 WP_000337826.1 hypothetical protein -
  RDJ18_RS01505 (RDJ18_01505) - 341936..342868 (-) 933 WP_000392186.1 hypothetical protein -
  RDJ18_RS01510 (RDJ18_01510) - 343008..343175 (-) 168 WP_000705247.1 hypothetical protein -
  RDJ18_RS01515 (RDJ18_01515) - 343377..344006 (-) 630 WP_029549401.1 LexA family transcriptional regulator -
  RDJ18_RS01520 (RDJ18_01520) - 344160..344387 (+) 228 WP_015978369.1 helix-turn-helix transcriptional regulator -
  RDJ18_RS01525 (RDJ18_01525) - 344410..345186 (+) 777 WP_029549402.1 Rha family transcriptional regulator -
  RDJ18_RS01530 (RDJ18_01530) - 345215..345418 (+) 204 WP_000394020.1 hypothetical protein -
  RDJ18_RS01535 (RDJ18_01535) - 345415..345549 (-) 135 WP_001119050.1 hypothetical protein -
  RDJ18_RS01540 (RDJ18_01540) - 345606..346394 (+) 789 WP_031862674.1 phage antirepressor KilAC domain-containing protein -
  RDJ18_RS01545 (RDJ18_01545) - 346411..346605 (+) 195 WP_000390105.1 hypothetical protein -
  RDJ18_RS01550 (RDJ18_01550) - 346659..347411 (+) 753 WP_001148595.1 phage antirepressor KilAC domain-containing protein -
  RDJ18_RS01555 (RDJ18_01555) - 347424..347684 (+) 261 WP_000435343.1 hypothetical protein -
  RDJ18_RS01560 (RDJ18_01560) - 347708..347863 (-) 156 Protein_309 hypothetical protein -
  RDJ18_RS01565 (RDJ18_01565) - 347918..348157 (+) 240 WP_001294156.1 hypothetical protein -
  RDJ18_RS01570 (RDJ18_01570) - 348485..349198 (+) 714 WP_114304731.1 BRO family protein -
  RDJ18_RS01575 (RDJ18_01575) - 349362..349592 (-) 231 WP_000395457.1 hypothetical protein -
  RDJ18_RS01580 (RDJ18_01580) - 349651..349914 (+) 264 WP_001124198.1 helix-turn-helix domain-containing protein -
  RDJ18_RS01585 (RDJ18_01585) - 349926..350087 (+) 162 WP_000066017.1 DUF1270 domain-containing protein -
  RDJ18_RS01590 (RDJ18_01590) - 350181..350441 (+) 261 WP_000291077.1 DUF1108 family protein -
  RDJ18_RS01595 (RDJ18_01595) - 350456..350935 (+) 480 WP_000002510.1 siphovirus Gp157 family protein -
  RDJ18_RS01600 (RDJ18_01600) - 350935..351573 (+) 639 WP_001043065.1 ERF family protein -
  RDJ18_RS01605 (RDJ18_01605) ssbA 351573..351998 (+) 426 WP_000934780.1 single-stranded DNA-binding protein Machinery gene
  RDJ18_RS01610 (RDJ18_01610) - 352012..352686 (+) 675 WP_001121804.1 putative HNHc nuclease -
  RDJ18_RS01615 (RDJ18_01615) - 352768..353523 (-) 756 WP_000276234.1 hypothetical protein -
  RDJ18_RS01620 (RDJ18_01620) - 353588..354358 (+) 771 WP_000190252.1 conserved phage C-terminal domain-containing protein -
  RDJ18_RS01625 (RDJ18_01625) - 354369..355142 (+) 774 WP_000803053.1 ATP-binding protein -
  RDJ18_RS01630 (RDJ18_01630) - 355136..355297 (+) 162 WP_000237153.1 hypothetical protein -
  RDJ18_RS01635 (RDJ18_01635) - 355310..355531 (+) 222 WP_001123679.1 DUF3269 family protein -
  RDJ18_RS01640 (RDJ18_01640) - 355541..355945 (+) 405 WP_000049807.1 DUF1064 domain-containing protein -
  RDJ18_RS01645 (RDJ18_01645) - 355950..356135 (+) 186 WP_001187254.1 DUF3113 family protein -
  RDJ18_RS01650 (RDJ18_01650) - 356136..356498 (+) 363 WP_000536054.1 SA1788 family PVL leukocidin-associated protein -
  RDJ18_RS01655 (RDJ18_01655) - 356498..356752 (+) 255 WP_000111495.1 DUF3310 domain-containing protein -
  RDJ18_RS01660 (RDJ18_01660) - 356758..357000 (+) 243 WP_001838261.1 phi PVL orf 51-like protein -
  RDJ18_RS01665 (RDJ18_01665) - 357013..357414 (+) 402 WP_000695762.1 hypothetical protein -
  RDJ18_RS01670 (RDJ18_01670) - 357411..357695 (+) 285 WP_001105618.1 hypothetical protein -
  RDJ18_RS01675 (RDJ18_01675) - 357688..357813 (+) 126 Protein_332 DUF1024 family protein -
  RDJ18_RS01680 (RDJ18_01680) - 358170..358580 (+) 411 WP_000197967.1 hypothetical protein -
  RDJ18_RS01685 (RDJ18_01685) - 358573..359109 (+) 537 WP_001066452.1 dUTPase -
  RDJ18_RS01690 (RDJ18_01690) - 359146..359391 (+) 246 WP_001282073.1 hypothetical protein -
  RDJ18_RS01695 (RDJ18_01695) - 359388..359594 (+) 207 WP_000195803.1 DUF1381 domain-containing protein -
  RDJ18_RS01700 (RDJ18_01700) rinB 359591..359740 (+) 150 WP_000595265.1 transcriptional activator RinB -
  RDJ18_RS01705 (RDJ18_01705) - 359899..360549 (+) 651 WP_001005262.1 hypothetical protein -
  RDJ18_RS01710 (RDJ18_01710) - 360549..360749 (+) 201 WP_309042854.1 DUF1514 family protein -
  RDJ18_RS01715 (RDJ18_01715) - 360777..361193 (+) 417 WP_000590122.1 hypothetical protein -
  RDJ18_RS01720 (RDJ18_01720) - 361425..361724 (+) 300 WP_000988336.1 HNH endonuclease -
  RDJ18_RS01725 (RDJ18_01725) - 361855..362199 (+) 345 WP_000402904.1 hypothetical protein -
  RDJ18_RS01730 (RDJ18_01730) - 362196..363857 (+) 1662 WP_000625088.1 terminase large subunit -
  RDJ18_RS01735 (RDJ18_01735) - 363873..365060 (+) 1188 WP_000025274.1 phage portal protein -
  RDJ18_RS01740 (RDJ18_01740) - 365044..365781 (+) 738 WP_000861914.1 head maturation protease, ClpP-related -
  RDJ18_RS01745 (RDJ18_01745) - 365805..366950 (+) 1146 WP_000154555.1 phage major capsid protein -
  RDJ18_RS01750 (RDJ18_01750) - 366970..367254 (+) 285 WP_000238236.1 hypothetical protein -
  RDJ18_RS01755 (RDJ18_01755) - 367244..367528 (+) 285 WP_000150936.1 phage head-tail adapter protein -
  RDJ18_RS01760 (RDJ18_01760) - 367512..367874 (+) 363 WP_000755147.1 head-tail adaptor protein -
  RDJ18_RS01765 (RDJ18_01765) - 367871..368275 (+) 405 WP_000114225.1 HK97 gp10 family phage protein -
  RDJ18_RS01770 (RDJ18_01770) - 368272..368679 (+) 408 WP_000565498.1 hypothetical protein -
  RDJ18_RS01775 (RDJ18_01775) - 368680..369324 (+) 645 WP_000268741.1 major tail protein -
  RDJ18_RS01780 (RDJ18_01780) - 369378..369590 (+) 213 WP_230402383.1 Ig-like domain-containing protein -
  RDJ18_RS01785 (RDJ18_01785) gpG 369640..369990 (+) 351 WP_001096355.1 phage tail assembly chaperone G -
  RDJ18_RS01790 (RDJ18_01790) gpGT 370041..370178 (+) 138 WP_001549167.1 phage tail assembly chaperone GT -
  RDJ18_RS01795 (RDJ18_01795) - 370235..374764 (+) 4530 WP_001795393.1 phage tail tape measure protein -
  RDJ18_RS01800 (RDJ18_01800) - 374761..376245 (+) 1485 WP_000567405.1 phage tail domain-containing protein -
  RDJ18_RS01805 (RDJ18_01805) - 376261..380043 (+) 3783 WP_000582173.1 phage tail spike protein -
  RDJ18_RS01810 (RDJ18_01810) - 380036..380188 (+) 153 WP_001000058.1 hypothetical protein -
  RDJ18_RS01815 (RDJ18_01815) - 380235..380522 (+) 288 WP_001040261.1 hypothetical protein -
  RDJ18_RS01820 (RDJ18_01820) - 380580..380876 (+) 297 WP_000539688.1 DUF2951 domain-containing protein -
  RDJ18_RS01825 (RDJ18_01825) pepG1 381068..381202 (+) 135 WP_000226108.1 type I toxin-antitoxin system toxin PepG1 -
  RDJ18_RS01830 (RDJ18_01830) - 381255..381362 (-) 108 WP_001791821.1 hypothetical protein -
  RDJ18_RS01835 (RDJ18_01835) - 381414..381668 (+) 255 WP_000611512.1 phage holin -
  RDJ18_RS01840 (RDJ18_01840) - 381680..382435 (+) 756 WP_000861038.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15847.32 Da        Isoelectric Point: 4.6952

>NTDB_id=874112 RDJ18_RS01605 WP_000934780.1 351573..351998(+) (ssbA) [Staphylococcus aureus strain SA191]
MLNRTVLVGRLTKDPEYRTAPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKVGQRVFVTEVVADSVQFLEPKNSNQQQNDNYQQQGQAQTGNNPFDNTEEDFSDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=874112 RDJ18_RS01605 WP_000934780.1 351573..351998(+) (ssbA) [Staphylococcus aureus strain SA191]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAGCGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGTCGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACAAAATGACAATTATCAACAACAAGGACAAGCTCAAACTGGTAATAATCCGTTTGACAATACTGAAG
AAGATTTTTCAGACCTCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

80.374

75.887

0.61
  ssb Latilactobacillus sakei subsp. sakei 23K

52.632

100

0.567
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

75.177

0.433
  ssbB/cilA Streptococcus mitis NCTC 12261

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.068

83.688

0.369
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.217

81.56

0.369
  ssbA Streptococcus mutans UA159

44.348

81.56

0.362
  ssbB/cilA Streptococcus mitis SK321

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae Rx1

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae D39

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae R6

43.22

83.688

0.362