Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RCG25_RS01350 Genome accession   NZ_CP133269
Coordinates   275420..275791 (+) Length   123 a.a.
NCBI ID   WP_308081895.1    Uniprot ID   -
Organism   Neobacillus sp. PS2-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 269166..283769 275420..275791 within 0


Gene organization within MGE regions


Location: 269166..283769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG25_RS01305 (RCG25_01305) - 269166..269471 (-) 306 WP_308081887.1 MGMT family protein -
  RCG25_RS01310 (RCG25_01310) - 269576..270169 (+) 594 WP_308081888.1 pyroglutamyl-peptidase I -
  RCG25_RS01315 (RCG25_01315) spoIIID 270661..270933 (+) 273 WP_007086083.1 sporulation transcriptional regulator SpoIIID -
  RCG25_RS01320 (RCG25_01320) - 271130..272131 (+) 1002 WP_308081889.1 rod shape-determining protein -
  RCG25_RS01325 (RCG25_01325) - 272512..272871 (+) 360 WP_308081890.1 DNA-directed RNA polymerase subunit beta -
  RCG25_RS01330 (RCG25_01330) fabZ 272966..273400 (+) 435 WP_308081891.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RCG25_RS01335 (RCG25_01335) - 273942..274256 (+) 315 WP_308081892.1 hypothetical protein -
  RCG25_RS01340 (RCG25_01340) - 274333..274596 (-) 264 WP_308081893.1 hypothetical protein -
  RCG25_RS01345 (RCG25_01345) - 274744..275175 (-) 432 WP_308081894.1 YwpF-like family protein -
  RCG25_RS01350 (RCG25_01350) ssbB 275420..275791 (+) 372 WP_308081895.1 single-stranded DNA-binding protein Machinery gene
  RCG25_RS01355 (RCG25_01355) - 275781..276005 (+) 225 WP_308081896.1 hypothetical protein -
  RCG25_RS01360 (RCG25_01360) - 276355..276765 (-) 411 WP_308081897.1 helix-turn-helix transcriptional regulator -
  RCG25_RS01365 (RCG25_01365) - 276981..277388 (+) 408 WP_308081898.1 hypothetical protein -
  RCG25_RS01370 (RCG25_01370) - 277618..278733 (+) 1116 WP_308081899.1 3D domain-containing protein -
  RCG25_RS01375 (RCG25_01375) - 278773..279189 (-) 417 WP_308081900.1 HIT family protein -
  RCG25_RS01380 (RCG25_01380) - 279211..280485 (-) 1275 WP_308081901.1 MFS transporter -
  RCG25_RS01385 (RCG25_01385) - 280502..281155 (-) 654 WP_308081902.1 MOSC domain-containing protein -
  RCG25_RS01390 (RCG25_01390) - 281647..281937 (+) 291 WP_308081903.1 YciI family protein -
  RCG25_RS01395 (RCG25_01395) - 281992..282366 (-) 375 WP_308081904.1 winged helix-turn-helix transcriptional regulator -
  RCG25_RS01400 (RCG25_01400) - 282558..283769 (+) 1212 WP_308081905.1 MFS transporter -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13850.78 Da        Isoelectric Point: 9.1844

>NTDB_id=873125 RCG25_RS01350 WP_308081895.1 275420..275791(+) (ssbB) [Neobacillus sp. PS2-9]
MINQVTLVGRLTKDPELKKTPEGNSVAHVTLAVSRHFRNHNGEIEADFVQCALWRKAAENTCQYCRKGSVVGITGRLQTR
NYENKEGKRVYVTEVVVETIRFLSAKPHDVVTEQKREEAGVGI

Nucleotide


Download         Length: 372 bp        

>NTDB_id=873125 RCG25_RS01350 WP_308081895.1 275420..275791(+) (ssbB) [Neobacillus sp. PS2-9]
ATGATTAATCAGGTCACGCTTGTTGGCCGACTGACGAAGGATCCAGAATTAAAAAAGACGCCAGAAGGGAATTCGGTCGC
ACATGTCACGCTGGCAGTCAGCCGGCATTTTCGGAATCACAATGGGGAGATTGAGGCCGATTTCGTGCAATGCGCACTTT
GGCGGAAAGCCGCTGAAAACACATGCCAATACTGCCGAAAGGGCTCCGTTGTAGGAATCACTGGCAGATTGCAAACCCGG
AATTATGAAAATAAAGAGGGAAAAAGAGTGTACGTTACAGAGGTAGTGGTGGAAACAATCCGTTTCCTAAGTGCCAAGCC
TCACGATGTGGTGACGGAGCAAAAAAGGGAGGAAGCGGGCGTTGGAATTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.138

88.618

0.577
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

86.179

0.512
  ssb Latilactobacillus sakei subsp. sakei 23K

52.101

96.748

0.504
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.133

91.87

0.415
  ssbB/cilA Streptococcus mitis NCTC 12261

45.133

91.87

0.415
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.248

91.87

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

44.248

91.87

0.407
  ssbB/cilA Streptococcus pneumoniae D39

44.248

91.87

0.407
  ssbB/cilA Streptococcus pneumoniae R6

44.248

91.87

0.407
  ssbB/cilA Streptococcus mitis SK321

44.248

91.87

0.407
  ssbA Streptococcus mutans UA159

42.735

95.122

0.407