Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RCG17_RS11885 Genome accession   NZ_CP133268
Coordinates   2346958..2347326 (-) Length   122 a.a.
NCBI ID   WP_308175346.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2346782..2369463 2346958..2347326 within 0


Gene organization within MGE regions


Location: 2346782..2369463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG17_RS11880 (RCG17_11880) - 2346782..2346961 (-) 180 WP_308175345.1 hypothetical protein -
  RCG17_RS11885 (RCG17_11885) ssbB 2346958..2347326 (-) 369 WP_308175346.1 single-stranded DNA-binding protein Machinery gene
  RCG17_RS11890 (RCG17_11890) - 2347608..2348030 (+) 423 WP_308175347.1 YwpF family protein -
  RCG17_RS11895 (RCG17_11895) - 2348114..2348401 (+) 288 WP_308175348.1 YciI family protein -
  RCG17_RS11900 (RCG17_11900) - 2348501..2349232 (+) 732 WP_308175349.1 GntR family transcriptional regulator -
  RCG17_RS11905 (RCG17_11905) - 2349425..2350396 (-) 972 WP_308175350.1 SIS domain-containing protein -
  RCG17_RS11910 (RCG17_11910) - 2350426..2351256 (-) 831 WP_308175351.1 sugar phosphate isomerase/epimerase family protein -
  RCG17_RS11915 (RCG17_11915) - 2351270..2352082 (-) 813 WP_308175352.1 fructoselysine 6-kinase -
  RCG17_RS11920 (RCG17_11920) - 2352095..2352816 (-) 722 Protein_2324 amino acid ABC transporter ATP-binding protein -
  RCG17_RS11925 (RCG17_11925) - 2352803..2353465 (-) 663 WP_308175353.1 amino acid ABC transporter permease -
  RCG17_RS11930 (RCG17_11930) - 2353523..2354359 (-) 837 WP_308175354.1 transporter substrate-binding domain-containing protein -
  RCG17_RS11935 (RCG17_11935) fabZ 2354858..2355296 (-) 439 Protein_2327 3-hydroxyacyl-ACP dehydratase FabZ -
  RCG17_RS28340 - 2355468..2356373 (+) 906 WP_374120922.1 lytic transglycosylase domain-containing protein -
  RCG17_RS11945 (RCG17_11945) - 2356402..2356653 (-) 252 WP_308175355.1 DNA-directed RNA polymerase subunit beta -
  RCG17_RS11950 (RCG17_11950) - 2356671..2357480 (-) 810 WP_308175356.1 flagellar hook-basal body protein -
  RCG17_RS11955 (RCG17_11955) - 2357506..2358285 (-) 780 WP_308175357.1 flagellar hook-basal body protein -
  RCG17_RS11960 (RCG17_11960) - 2358962..2359962 (-) 1001 Protein_2332 rod shape-determining protein -
  RCG17_RS11965 (RCG17_11965) spoIIID 2360105..2360377 (-) 273 WP_308175358.1 sporulation transcriptional regulator SpoIIID -
  RCG17_RS11970 (RCG17_11970) - 2360757..2361065 (+) 309 WP_308175359.1 MGMT family protein -
  RCG17_RS11975 (RCG17_11975) - 2361172..2362794 (-) 1623 WP_308175360.1 mannitol dehydrogenase family protein -
  RCG17_RS11980 (RCG17_11980) - 2362864..2363061 (+) 198 WP_308175361.1 hypothetical protein -
  RCG17_RS11985 (RCG17_11985) - 2363457..2365424 (-) 1968 WP_308175362.1 penicillin-binding transpeptidase domain-containing protein -
  RCG17_RS11990 (RCG17_11990) - 2365774..2366562 (-) 789 WP_308175363.1 M23 family metallopeptidase -
  RCG17_RS11995 (RCG17_11995) - 2366715..2367710 (-) 996 WP_308175364.1 nuclease-related domain-containing protein -
  RCG17_RS12000 (RCG17_12000) - 2368190..2368384 (-) 195 WP_308175365.1 hypothetical protein -
  RCG17_RS12005 (RCG17_12005) spoIID 2368429..2369463 (-) 1035 WP_308175366.1 stage II sporulation protein D -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13964.86 Da        Isoelectric Point: 9.4999

>NTDB_id=873091 RCG17_RS11885 WP_308175346.1 2346958..2347326(-) (ssbB) [Neobacillus sp. PS3-12]
MINQVTIVGRLTRDPEAKVTSEGIPFAHVTLAVNRQYRNQNGEQEADFISCTLWRKAAQNTAQYCRKGSVVGITGRIQTR
HYDTQEGKRIYITEVIADTVRFLSSKPHIETKKQKIEEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=873091 RCG17_RS11885 WP_308175346.1 2346958..2347326(-) (ssbB) [Neobacillus sp. PS3-12]
ATGATCAATCAAGTGACCATTGTCGGAAGATTGACACGTGATCCCGAAGCCAAAGTGACGTCAGAAGGGATCCCCTTCGC
CCATGTAACCTTGGCCGTCAACCGCCAATACCGAAATCAAAACGGTGAACAGGAAGCGGATTTTATCTCTTGCACGCTTT
GGCGCAAAGCCGCTCAAAACACAGCACAATACTGCCGAAAGGGGTCCGTTGTCGGAATTACCGGGAGAATCCAAACCCGC
CATTATGACACGCAGGAAGGCAAACGGATATACATCACCGAAGTGATCGCCGATACCGTTCGCTTTTTGAGCAGCAAACC
GCACATCGAAACGAAGAAACAAAAAATCGAGGAGGAATTGCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.617

87.705

0.549
  ssb Latilactobacillus sakei subsp. sakei 23K

49.558

92.623

0.459
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.83

86.885

0.459
  ssbB Streptococcus sobrinus strain NIDR 6715-7

37.879

100

0.41
  ssbB/cilA Streptococcus mitis NCTC 12261

37.879

100

0.41
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.121

100

0.402
  ssbB/cilA Streptococcus pneumoniae Rx1

37.121

100

0.402
  ssbB/cilA Streptococcus pneumoniae D39

37.121

100

0.402
  ssbB/cilA Streptococcus pneumoniae R6

37.121

100

0.402
  ssbB/cilA Streptococcus mitis SK321

36.364

100

0.393
  ssbA Streptococcus mutans UA159

34.848

100

0.377