Detailed information NTG0873077

Bioinformatically predicted

Overview

• Name: comEA
• Type: Machinery gene
• Locus tag: RCG17_RS05520
• Genome accession: NZ_CP133268
• Coordinates: 1055590..1056036 (-)
• Length: 148 a.a.
• NCBI ID: WP_308175772.1
• Uniprot ID: -
• Organism: Neobacillus sp. PS3-12
• Function: dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1050590..1061036

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RCG17_RS05495 (RCG17_05495)	rpsT	1050891..1051151 (+)	261	WP_308174242.1	30S ribosomal protein S20	-
RCG17_RS05500 (RCG17_05500)	holA	1051192..1052208 (-)	1017	WP_308174243.1	DNA polymerase III subunit delta	-
RCG17_RS05505 (RCG17_05505)	-	1052494..1052628 (+)	135	WP_308174244.1	YqzM family protein	-
RCG17_RS05510 (RCG17_05510)	-	1052696..1055023 (-)	2328	WP_308174245.1	DNA internalization-related competence protein ComEC/Rec2	-
RCG17_RS05515 (RCG17_05515)	-	1055081..1055509 (-)	429	WP_308174246.1	cytidine/deoxycytidylate deaminase family protein	-
RCG17_RS05520 (RCG17_05520)	comEA	1055590..1056036 (-)	447	WP_308175772.1	helix-hairpin-helix domain-containing protein	Machinery gene
RCG17_RS05525 (RCG17_05525)	comER	1056339..1057164 (+)	826	Protein_1078	late competence protein ComER	-
RCG17_RS05530 (RCG17_05530)	-	1057276..1058031 (-)	756	WP_308174247.1	class I SAM-dependent methyltransferase	-
RCG17_RS05535 (RCG17_05535)	rsfS	1058028..1058384 (-)	357	WP_308174248.1	ribosome silencing factor	-
RCG17_RS05540 (RCG17_05540)	yqeK	1058389..1058955 (-)	567	WP_308174249.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
RCG17_RS05545 (RCG17_05545)	-	1058945..1059514 (-)	570	WP_308174250.1	nicotinate-nucleotide adenylyltransferase	-
RCG17_RS05550 (RCG17_05550)	yhbY	1059540..1059833 (-)	294	WP_308174251.1	ribosome assembly RNA-binding protein YhbY	-
RCG17_RS05555 (RCG17_05555)	aroE	1059820..1060668 (-)	849	WP_308174252.1	shikimate dehydrogenase	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 15608.38 Da
• Isoelectric Point: 5.1771

>NTDB_id=873077 RCG17_RS05520 WP_308175772.1 1055590..1056036(-) (comEA) [Neobacillus sp. PS3-12]
MIVDVKGAIKQPGVYHSNQNERVIDVIGRAGGLTDNADQTQVNFAAHVQDEMVIYIPAKGEVSTGSPGNSSASIGSTNGA
GAQGGKININKADENELQNLPGIGPSKAASIIQYRQENGLFQNIEDLKKISGIGDKTFEKLKDSISVQ

Nucleotide

• Length: 447 bp

>NTDB_id=873077 RCG17_RS05520 WP_308175772.1 1055590..1056036(-) (comEA) [Neobacillus sp. PS3-12]
ATAATTGTAGATGTAAAAGGAGCAATCAAACAGCCTGGGGTTTATCATTCAAATCAAAATGAAAGAGTCATTGATGTGAT
CGGGCGGGCAGGAGGACTTACGGACAATGCCGACCAAACACAGGTAAACTTTGCCGCACACGTTCAAGATGAGATGGTTA
TTTATATTCCTGCAAAAGGGGAAGTAAGCACAGGCTCACCTGGAAATAGCTCAGCCTCAATAGGATCGACAAATGGGGCC
GGGGCACAAGGCGGGAAAATCAACATTAATAAGGCCGATGAAAATGAACTGCAAAACTTGCCGGGAATCGGACCATCCAA
AGCAGCTTCTATTATCCAATATCGGCAAGAAAATGGCTTATTCCAAAACATTGAGGATTTGAAAAAAATTAGCGGAATTG
GGGACAAAACTTTTGAAAAATTGAAGGATTCCATTTCCGTTCAATAG

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (84-145)

• SLBB domain (SLBB) (2-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEA	Lactococcus lactis subsp. cremoris KW2	52.288	100	0.541
comEA	Bacillus subtilis subsp. subtilis str. 168	48.649	100	0.486
comEA	Latilactobacillus sakei subsp. sakei 23K	42.945	100	0.473
comEA/celA/cilE	Streptococcus mitis SK321	45.695	100	0.466
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	44.371	100	0.453
comEA	Streptococcus thermophilus LMD-9	43.919	100	0.439
comEA/celA/cilE	Streptococcus pneumoniae Rx1	43.624	100	0.439
comEA/celA/cilE	Streptococcus pneumoniae D39	43.624	100	0.439
comEA/celA/cilE	Streptococcus pneumoniae R6	43.624	100	0.439
comEA/celA/cilE	Streptococcus mitis NCTC 12261	42.667	100	0.432
comEA	Staphylococcus aureus MW2	41.379	97.973	0.405
comEA	Staphylococcus aureus N315	40.69	97.973	0.399