Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RCG20_RS10075 Genome accession   NZ_CP133266
Coordinates   2047357..2047722 (-) Length   121 a.a.
NCBI ID   WP_308184104.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2042357..2052722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG20_RS10060 (RCG20_10060) - 2045501..2045944 (-) 444 WP_308184101.1 hypothetical protein -
  RCG20_RS10065 (RCG20_10065) - 2046174..2046584 (+) 411 WP_308184102.1 helix-turn-helix transcriptional regulator -
  RCG20_RS10070 (RCG20_10070) - 2047143..2047367 (-) 225 WP_308184103.1 hypothetical protein -
  RCG20_RS10075 (RCG20_10075) ssbB 2047357..2047722 (-) 366 WP_308184104.1 single-stranded DNA-binding protein Machinery gene
  RCG20_RS10080 (RCG20_10080) - 2048016..2048435 (+) 420 WP_308184105.1 YwpF family protein -
  RCG20_RS10085 (RCG20_10085) - 2048668..2050359 (+) 1692 WP_308184106.1 methyl-accepting chemotaxis protein -
  RCG20_RS10090 (RCG20_10090) fabZ 2051025..2051462 (-) 438 WP_308184107.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RCG20_RS10095 (RCG20_10095) - 2051792..2052289 (-) 498 WP_308184108.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13720.77 Da        Isoelectric Point: 8.9974

>NTDB_id=873013 RCG20_RS10075 WP_308184104.1 2047357..2047722(-) (ssbB) [Neobacillus sp. PS3-40]
MINQVTLVGRLTKDPELKITSDGTPVMHVILAVSRHYRNQNGEVDTDFVQCTLWRKAAENTNQYCKKGYVVGITGKIQTR
HYDNKEGLRVYVTEVVAESIRFLSSKPKAEQPVKEEMPIGL

Nucleotide


Download         Length: 366 bp        

>NTDB_id=873013 RCG20_RS10075 WP_308184104.1 2047357..2047722(-) (ssbB) [Neobacillus sp. PS3-40]
ATGATAAATCAAGTTACTTTAGTTGGAAGATTGACCAAGGATCCCGAATTGAAAATAACATCAGATGGAACGCCGGTGAT
GCATGTGATACTAGCAGTAAGTCGGCATTACCGAAATCAAAATGGCGAAGTTGATACAGACTTTGTCCAATGCACACTAT
GGCGAAAAGCAGCCGAAAATACGAACCAATATTGCAAAAAGGGATATGTAGTCGGAATTACGGGGAAAATTCAAACCCGC
CATTACGATAACAAGGAGGGACTTAGAGTATATGTAACAGAAGTGGTCGCCGAGTCGATTCGTTTCCTCAGTAGCAAGCC
TAAAGCAGAACAACCTGTAAAGGAGGAAATGCCAATTGGCCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.185

89.256

0.537
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.83

87.603

0.463
  ssb Latilactobacillus sakei subsp. sakei 23K

49.55

91.736

0.455
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.609

95.041

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

39.13

95.041

0.372
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.13

95.041

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

38.261

95.041

0.364
  ssbB/cilA Streptococcus pneumoniae D39

38.261

95.041

0.364
  ssbB/cilA Streptococcus pneumoniae R6

38.261

95.041

0.364
  ssbB/cilA Streptococcus mitis SK321

38.261

95.041

0.364
  ssbA Streptococcus mutans UA159

38.261

95.041

0.364