Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RCG19_RS07985 Genome accession   NZ_CP133265
Coordinates   1639901..1640272 (-) Length   123 a.a.
NCBI ID   WP_308110421.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1621120..1649545 1639901..1640272 within 0


Gene organization within MGE regions


Location: 1621120..1649545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG19_RS07905 (RCG19_07905) - 1621129..1622301 (+) 1173 WP_308110953.1 HupE/UreJ family protein -
  RCG19_RS07910 (RCG19_07910) - 1622447..1623184 (-) 738 WP_308110406.1 hypothetical protein -
  RCG19_RS07915 (RCG19_07915) - 1623196..1623678 (-) 483 WP_308110407.1 protein-export chaperone SecB -
  RCG19_RS07920 (RCG19_07920) - 1623693..1624331 (-) 639 WP_308110408.1 hypothetical protein -
  RCG19_RS07925 (RCG19_07925) - 1624810..1625319 (-) 510 WP_308110409.1 hypothetical protein -
  RCG19_RS07930 (RCG19_07930) - 1625584..1626363 (+) 780 WP_308110410.1 Cof-type HAD-IIB family hydrolase -
  RCG19_RS07935 (RCG19_07935) - 1626457..1627950 (-) 1494 WP_308110411.1 transposase -
  RCG19_RS07940 (RCG19_07940) - 1628649..1629866 (+) 1218 WP_308110412.1 LysM peptidoglycan-binding domain-containing protein -
  RCG19_RS07945 (RCG19_07945) - 1630275..1631897 (+) 1623 WP_308110413.1 SWIM zinc finger family protein -
  RCG19_RS07950 (RCG19_07950) - 1632261..1635302 (+) 3042 WP_308110414.1 DEAD/DEAH box helicase -
  RCG19_RS07955 (RCG19_07955) - 1635446..1635703 (-) 258 WP_308110415.1 DUF3949 domain-containing protein -
  RCG19_RS07960 (RCG19_07960) - 1635737..1636813 (-) 1077 WP_308110416.1 hypothetical protein -
  RCG19_RS07965 (RCG19_07965) - 1636974..1638095 (-) 1122 WP_308110417.1 3D domain-containing protein -
  RCG19_RS07970 (RCG19_07970) - 1638398..1638802 (-) 405 WP_308110418.1 hypothetical protein -
  RCG19_RS07975 (RCG19_07975) - 1639013..1639426 (+) 414 WP_308110419.1 helix-turn-helix transcriptional regulator -
  RCG19_RS07980 (RCG19_07980) - 1639687..1639911 (-) 225 WP_308110420.1 hypothetical protein -
  RCG19_RS07985 (RCG19_07985) ssbB 1639901..1640272 (-) 372 WP_308110421.1 single-stranded DNA-binding protein Machinery gene
  RCG19_RS07990 (RCG19_07990) - 1640517..1640948 (+) 432 WP_308110422.1 YwpF-like family protein -
  RCG19_RS07995 (RCG19_07995) - 1641465..1641803 (-) 339 WP_308110423.1 hypothetical protein -
  RCG19_RS08000 (RCG19_08000) fabZ 1642195..1642629 (-) 435 WP_166242304.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RCG19_RS08005 (RCG19_08005) - 1642739..1643050 (-) 312 WP_308110424.1 DNA-directed RNA polymerase subunit beta -
  RCG19_RS08010 (RCG19_08010) - 1643411..1644412 (-) 1002 WP_166242308.1 rod shape-determining protein -
  RCG19_RS08015 (RCG19_08015) spoIIID 1644589..1644861 (-) 273 WP_007086083.1 sporulation transcriptional regulator SpoIIID -
  RCG19_RS08020 (RCG19_08020) - 1645487..1645813 (+) 327 WP_308110426.1 MGMT family protein -
  RCG19_RS08025 (RCG19_08025) - 1646012..1648039 (-) 2028 WP_308110427.1 penicillin-binding transpeptidase domain-containing protein -
  RCG19_RS08030 (RCG19_08030) - 1648147..1648947 (-) 801 WP_308110428.1 M23 family metallopeptidase -
  RCG19_RS08035 (RCG19_08035) - 1649084..1649545 (+) 462 WP_308110429.1 VanZ family protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13836.75 Da        Isoelectric Point: 9.1853

>NTDB_id=872964 RCG19_RS07985 WP_308110421.1 1639901..1640272(-) (ssbB) [Neobacillus sp. OS1-2]
MINQVILVGRLTRDPELKKTPDGTAVSQISLAVNRHFRNHNGEIEADFVPCTLWRKAAENTCHYCRKGSVIGITGRLQTR
HYDNKEGKRVYVTEVVAETVRFLSAKPHDASPEPKKEEVPVGN

Nucleotide


Download         Length: 372 bp        

>NTDB_id=872964 RCG19_RS07985 WP_308110421.1 1639901..1640272(-) (ssbB) [Neobacillus sp. OS1-2]
ATGATAAATCAGGTTATACTTGTTGGTCGGCTGACGCGGGATCCGGAATTAAAAAAGACGCCGGATGGGACGGCTGTATC
ACAAATATCGCTGGCAGTAAATCGCCACTTTCGCAACCATAATGGTGAAATTGAGGCCGATTTTGTTCCGTGCACATTAT
GGCGGAAGGCAGCGGAAAATACGTGCCACTATTGTCGAAAAGGATCAGTTATCGGGATTACGGGCAGACTCCAAACCCGC
CATTATGATAACAAAGAAGGCAAAAGGGTGTATGTTACAGAGGTGGTGGCTGAAACGGTCCGTTTCCTGAGCGCCAAACC
ACATGATGCTTCGCCTGAGCCCAAAAAGGAGGAAGTACCAGTTGGAAATTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.062

91.87

0.561
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

86.179

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

86.179

0.48
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.133

91.87

0.415
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.248

91.87

0.407
  ssbB/cilA Streptococcus mitis NCTC 12261

44.248

91.87

0.407
  ssbA Streptococcus mutans UA159

42.735

95.122

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

43.363

91.87

0.398
  ssbB/cilA Streptococcus pneumoniae D39

43.363

91.87

0.398
  ssbB/cilA Streptococcus pneumoniae R6

43.363

91.87

0.398
  ssbB/cilA Streptococcus mitis SK321

43.363

91.87

0.398