Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RCF70_RS08850 | Genome accession | NZ_CP133247 |
| Coordinates | 1793600..1794019 (-) | Length | 139 a.a. |
| NCBI ID | WP_105965184.1 | Uniprot ID | A0AAE5SZ05 |
| Organism | Staphylococcus chromogenes strain TA | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1760380..1803235 | 1793600..1794019 | within | 0 |
Gene organization within MGE regions
Location: 1760380..1803235
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RCF70_RS08650 (RCF70_08615) | - | 1760380..1761027 (-) | 648 | WP_107359669.1 | ABC transporter ATP-binding protein | - |
| RCF70_RS08655 (RCF70_08620) | - | 1761039..1761596 (-) | 558 | WP_107359670.1 | GNAT family N-acetyltransferase | - |
| RCF70_RS08660 (RCF70_08625) | - | 1762589..1763326 (-) | 738 | WP_037571949.1 | hypothetical protein | - |
| RCF70_RS08665 (RCF70_08630) | - | 1763332..1764123 (-) | 792 | WP_037573026.1 | HipA family kinase | - |
| RCF70_RS08670 (RCF70_08635) | - | 1764950..1766395 (-) | 1446 | WP_105985991.1 | SH3 domain-containing protein | - |
| RCF70_RS08675 (RCF70_08640) | - | 1766376..1766810 (-) | 435 | WP_105967198.1 | phage holin | - |
| RCF70_RS08680 (RCF70_08645) | - | 1766931..1767224 (-) | 294 | WP_037571969.1 | DUF2951 family protein | - |
| RCF70_RS08685 (RCF70_08650) | - | 1767240..1767536 (-) | 297 | WP_105965207.1 | hypothetical protein | - |
| RCF70_RS08690 (RCF70_08655) | - | 1767583..1767723 (-) | 141 | WP_182470811.1 | hypothetical protein | - |
| RCF70_RS08695 (RCF70_08660) | - | 1767707..1771180 (-) | 3474 | WP_419791656.1 | phage tail spike protein | - |
| RCF70_RS08700 (RCF70_08665) | - | 1771182..1772672 (-) | 1491 | WP_107364338.1 | phage distal tail protein | - |
| RCF70_RS08705 (RCF70_08670) | - | 1772672..1777249 (-) | 4578 | WP_107364339.1 | phage tail tape measure protein | - |
| RCF70_RS08710 (RCF70_08675) | gpG | 1777275..1777907 (-) | 633 | WP_419791657.1 | phage tail assembly chaperone G | - |
| RCF70_RS08715 (RCF70_08680) | - | 1777977..1778915 (-) | 939 | WP_105963560.1 | major tail protein | - |
| RCF70_RS08720 (RCF70_08685) | - | 1778927..1779289 (-) | 363 | WP_107360637.1 | DUF806 family protein | - |
| RCF70_RS08725 (RCF70_08690) | - | 1779286..1779663 (-) | 378 | WP_107360638.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| RCF70_RS08730 (RCF70_08695) | - | 1779663..1779995 (-) | 333 | WP_105963557.1 | head-tail adaptor protein | - |
| RCF70_RS08735 (RCF70_08700) | - | 1779976..1780266 (-) | 291 | WP_107360639.1 | head-tail connector protein | - |
| RCF70_RS08740 (RCF70_08705) | - | 1780276..1780434 (-) | 159 | WP_164671795.1 | hypothetical protein | - |
| RCF70_RS08745 (RCF70_08710) | - | 1780447..1781694 (-) | 1248 | WP_107360640.1 | phage major capsid protein | - |
| RCF70_RS08750 (RCF70_08715) | - | 1781763..1782362 (-) | 600 | WP_419791658.1 | HK97 family phage prohead protease | - |
| RCF70_RS08755 (RCF70_08720) | - | 1782346..1783611 (-) | 1266 | WP_198645131.1 | phage portal protein | - |
| RCF70_RS08760 (RCF70_08725) | - | 1783827..1785530 (-) | 1704 | WP_107360642.1 | terminase large subunit | - |
| RCF70_RS08765 (RCF70_08730) | - | 1785530..1786000 (-) | 471 | WP_107360643.1 | phage terminase small subunit P27 family | - |
| RCF70_RS08770 (RCF70_08735) | - | 1786082..1786459 (-) | 378 | WP_107360644.1 | HNH endonuclease | - |
| RCF70_RS08775 (RCF70_08740) | - | 1786464..1786826 (-) | 363 | WP_105965195.1 | hypothetical protein | - |
| RCF70_RS08780 (RCF70_08745) | - | 1787009..1787404 (-) | 396 | WP_103158818.1 | hypothetical protein | - |
| RCF70_RS08785 (RCF70_08750) | - | 1787415..1787570 (-) | 156 | WP_157946201.1 | hypothetical protein | - |
| RCF70_RS08790 (RCF70_08755) | - | 1787670..1787876 (-) | 207 | WP_107360645.1 | hypothetical protein | - |
| RCF70_RS08795 (RCF70_08760) | - | 1787924..1788430 (-) | 507 | WP_107360646.1 | dUTP diphosphatase | - |
| RCF70_RS08800 (RCF70_08765) | - | 1788540..1788854 (+) | 315 | WP_107360647.1 | DUF4870 domain-containing protein | - |
| RCF70_RS08805 (RCF70_08770) | - | 1788882..1789094 (-) | 213 | WP_105965190.1 | hypothetical protein | - |
| RCF70_RS08810 (RCF70_08775) | - | 1789094..1789510 (-) | 417 | WP_234014784.1 | DUF3310 domain-containing protein | - |
| RCF70_RS08815 (RCF70_08780) | - | 1789507..1789929 (-) | 423 | WP_105965189.1 | hypothetical protein | - |
| RCF70_RS08820 (RCF70_08785) | - | 1789931..1790353 (-) | 423 | WP_060550724.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RCF70_RS08825 (RCF70_08790) | - | 1790340..1790558 (-) | 219 | WP_105965188.1 | hypothetical protein | - |
| RCF70_RS08830 (RCF70_08795) | - | 1790555..1791793 (-) | 1239 | WP_105965187.1 | DnaB helicase C-terminal domain-containing protein | - |
| RCF70_RS08835 (RCF70_08800) | - | 1791786..1792127 (-) | 342 | WP_234014782.1 | hypothetical protein | - |
| RCF70_RS08840 (RCF70_08805) | - | 1792124..1792918 (-) | 795 | WP_105965186.1 | phage replisome organizer N-terminal domain-containing protein | - |
| RCF70_RS08845 (RCF70_08810) | - | 1792911..1793588 (-) | 678 | WP_105965185.1 | putative HNHc nuclease | - |
| RCF70_RS08850 (RCF70_08815) | ssbA | 1793600..1794019 (-) | 420 | WP_105965184.1 | single-stranded DNA-binding protein | Machinery gene |
| RCF70_RS08855 (RCF70_08820) | - | 1794019..1794642 (-) | 624 | WP_107364341.1 | ERF family protein | - |
| RCF70_RS08860 (RCF70_08825) | - | 1794642..1795127 (-) | 486 | WP_105967181.1 | siphovirus Gp157 family protein | - |
| RCF70_RS08865 (RCF70_08830) | - | 1795124..1795390 (-) | 267 | WP_105965181.1 | DUF1108 family protein | - |
| RCF70_RS08870 (RCF70_08835) | - | 1795642..1795854 (-) | 213 | WP_105965180.1 | hypothetical protein | - |
| RCF70_RS08875 (RCF70_08840) | - | 1796237..1796497 (-) | 261 | WP_107364342.1 | hypothetical protein | - |
| RCF70_RS08880 (RCF70_08845) | - | 1796581..1796961 (+) | 381 | WP_105963625.1 | DUF2513 domain-containing protein | - |
| RCF70_RS08885 (RCF70_08850) | - | 1796948..1797145 (-) | 198 | WP_037572072.1 | hypothetical protein | - |
| RCF70_RS08890 (RCF70_08855) | tscA | 1797182..1797406 (-) | 225 | WP_105965178.1 | type II toxin-antitoxin system antitoxin TscA | - |
| RCF70_RS08895 (RCF70_08860) | - | 1797418..1798227 (-) | 810 | WP_234014781.1 | Bro-N domain-containing protein | - |
| RCF70_RS08900 (RCF70_08865) | - | 1798241..1798462 (-) | 222 | WP_105965177.1 | transcriptional regulator | - |
| RCF70_RS08905 (RCF70_08870) | - | 1798658..1799350 (+) | 693 | WP_105965176.1 | helix-turn-helix domain-containing protein | - |
| RCF70_RS08910 (RCF70_08875) | - | 1799367..1799528 (+) | 162 | WP_157947099.1 | hypothetical protein | - |
| RCF70_RS08915 (RCF70_08880) | - | 1799570..1800091 (+) | 522 | WP_107364343.1 | hypothetical protein | - |
| RCF70_RS08920 (RCF70_08885) | - | 1800593..1800769 (+) | 177 | WP_157946230.1 | hypothetical protein | - |
| RCF70_RS08925 (RCF70_08890) | - | 1801035..1802003 (+) | 969 | WP_037572091.1 | DUF3644 domain-containing protein | - |
| RCF70_RS08930 (RCF70_08895) | - | 1802186..1803235 (+) | 1050 | WP_105962989.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 15652.23 Da Isoelectric Point: 4.8892
>NTDB_id=872794 RCF70_RS08850 WP_105965184.1 1793600..1794019(-) (ssbA) [Staphylococcus chromogenes strain TA]
MLNRVVLVGRLTKDPEFRTTPSGVDVSTFTLAVNRNFKNKDGEQQADFINCVVFRKQAENVKNFLSKGSLAGVDGRMQSR
SYENKEGQRVYVTEVVCDSVQFLDPKNNNQQNNQQQNGQTQTGNNPFDNASIDDDDLPF
MLNRVVLVGRLTKDPEFRTTPSGVDVSTFTLAVNRNFKNKDGEQQADFINCVVFRKQAENVKNFLSKGSLAGVDGRMQSR
SYENKEGQRVYVTEVVCDSVQFLDPKNNNQQNNQQQNGQTQTGNNPFDNASIDDDDLPF
Nucleotide
Download Length: 420 bp
>NTDB_id=872794 RCF70_RS08850 WP_105965184.1 1793600..1794019(-) (ssbA) [Staphylococcus chromogenes strain TA]
ATGCTTAACAGAGTTGTATTAGTAGGACGATTAACAAAAGACCCTGAATTCAGAACGACGCCATCAGGCGTAGACGTATC
AACATTCACACTTGCGGTAAATCGCAATTTCAAAAATAAAGATGGAGAACAACAAGCTGACTTTATTAATTGCGTTGTAT
TCCGCAAGCAAGCTGAAAACGTCAAAAACTTTTTAAGTAAAGGTAGCTTAGCAGGCGTTGATGGACGGATGCAATCACGC
AGTTACGAAAACAAAGAAGGTCAACGTGTTTATGTAACTGAAGTCGTTTGTGACAGTGTTCAATTTCTAGACCCAAAGAA
TAACAACCAACAGAATAACCAACAACAAAACGGACAAACACAAACAGGTAATAATCCTTTTGATAACGCTAGTATCGATG
ACGACGATTTACCTTTCTAG
ATGCTTAACAGAGTTGTATTAGTAGGACGATTAACAAAAGACCCTGAATTCAGAACGACGCCATCAGGCGTAGACGTATC
AACATTCACACTTGCGGTAAATCGCAATTTCAAAAATAAAGATGGAGAACAACAAGCTGACTTTATTAATTGCGTTGTAT
TCCGCAAGCAAGCTGAAAACGTCAAAAACTTTTTAAGTAAAGGTAGCTTAGCAGGCGTTGATGGACGGATGCAATCACGC
AGTTACGAAAACAAAGAAGGTCAACGTGTTTATGTAACTGAAGTCGTTTGTGACAGTGTTCAATTTCTAGACCCAAAGAA
TAACAACCAACAGAATAACCAACAACAAAACGGACAAACACAAACAGGTAATAATCCTTTTGATAACGCTAGTATCGATG
ACGACGATTTACCTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.233 |
100 |
0.683 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.626 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
76.259 |
0.46 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.446 |
100 |
0.424 |
| ssbA | Streptococcus mutans UA159 |
40.288 |
100 |
0.403 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
37.41 |
100 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
37.41 |
100 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
36.691 |
100 |
0.367 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
36.691 |
100 |
0.367 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
36.691 |
100 |
0.367 |
| ssbB/cilA | Streptococcus mitis SK321 |
36.691 |
100 |
0.367 |