Detailed information NTG0872688

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: RCF73_RS06315
• Genome accession: NZ_CP133240
• Coordinates: 1246016..1246333 (+)
• Length: 105 a.a.
• NCBI ID: WP_419790399.1
• Uniprot ID: -
• Organism: Staphylococcus chromogenes strain CCM
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1241016..1251333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RCF73_RS06280 (RCF73_06245)	-	1241803..1242006 (+)	204	WP_037573910.1	YqgQ family protein	-
RCF73_RS06285 (RCF73_06250)	-	1242003..1242989 (+)	987	WP_037573907.1	ROK family glucokinase	-
RCF73_RS06290 (RCF73_06255)	-	1242990..1243301 (+)	312	Protein_1201	MTH1187 family thiamine-binding protein	-
RCF73_RS06295 (RCF73_06260)	-	1243315..1243938 (+)	624	WP_419790397.1	MBL fold metallo-hydrolase	-
RCF73_RS06300 (RCF73_06265)	comGA	1243991..1244965 (+)	975	WP_037573899.1	competence type IV pilus ATPase ComGA	Machinery gene
RCF73_RS06305 (RCF73_06270)	-	1244934..1245587 (+)	654	WP_419790398.1	type II secretion system F family protein	-
RCF73_RS06310 (RCF73_06275)	-	1245600..1246001 (+)	402	WP_419791530.1	type II secretion system F family protein	-
RCF73_RS06315 (RCF73_06280)	comGC	1246016..1246333 (+)	318	WP_419790399.1	competence type IV pilus major pilin ComGC	Machinery gene
RCF73_RS06320 (RCF73_06285)	comGD	1246323..1246754 (+)	432	WP_051604961.1	competence type IV pilus minor pilin ComGD	-
RCF73_RS06325 (RCF73_06290)	-	1246859..1247041 (+)	183	WP_133172104.1	hypothetical protein	-
RCF73_RS06330 (RCF73_06295)	-	1247058..1247432 (+)	375	WP_107374195.1	competence type IV pilus minor pilin ComGF	-
RCF73_RS06335 (RCF73_06300)	-	1247597..1248121 (+)	525	WP_084276016.1	shikimate kinase	-
RCF73_RS06340 (RCF73_06305)	gcvT	1248274..1249365 (+)	1092	WP_105965325.1	glycine cleavage system aminomethyltransferase GcvT	-
RCF73_RS06345 (RCF73_06310)	gcvPA	1249378..1250727 (+)	1350	WP_419790400.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

• Length: 105 a.a.
• Molecular weight: 11787.02 Da
• Isoelectric Point: 9.5646

>NTDB_id=872688 RCF73_RS06315 WP_419790399.1 1246016..1246333(+) (comGC) [Staphylococcus chromogenes strain CCM]
MKLFKKLKENKGFTLIEMLLVLLIISVLLILIIPNVAKQSEHIQKTGCSAQLKLVESQIEAYTLKFNRKPSTIDELVQEG
YIKENQKSCKNGDTIILRGGEAVVS

Nucleotide

• Length: 318 bp

>NTDB_id=872688 RCF73_RS06315 WP_419790399.1 1246016..1246333(+) (comGC) [Staphylococcus chromogenes strain CCM]
ATGAAATTATTTAAAAAGTTAAAAGAAAACAAGGGGTTTACGTTAATTGAAATGCTTTTAGTTTTGTTAATTATAAGTGT
ACTTTTAATACTAATTATTCCTAATGTTGCTAAACAATCAGAACATATTCAAAAAACAGGTTGTTCAGCACAACTTAAAT
TAGTCGAAAGTCAAATTGAAGCATATACTTTGAAATTTAATCGAAAACCTTCAACAATCGACGAACTTGTTCAAGAAGGT
TATATCAAAGAAAATCAAAAATCATGCAAAAATGGAGACACCATCATATTACGTGGCGGAGAAGCCGTTGTTTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (10-32)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Staphylococcus aureus N315	66.019	98.095	0.648
comGC	Staphylococcus aureus MW2	66.019	98.095	0.648
comGC	Bacillus subtilis subsp. subtilis str. 168	45.745	89.524	0.41
comYC	Streptococcus gordonii str. Challis substr. CH1	50	81.905	0.41
comGC/cglC	Streptococcus pneumoniae R6	47.674	81.905	0.39
comGC/cglC	Streptococcus pneumoniae TIGR4	47.674	81.905	0.39
comGC/cglC	Streptococcus pneumoniae Rx1	47.674	81.905	0.39
comGC/cglC	Streptococcus pneumoniae D39	47.674	81.905	0.39
comGC/cglC	Streptococcus mitis SK321	49.383	77.143	0.381
comYC	Streptococcus mutans UA140	51.948	73.333	0.381
comYC	Streptococcus mutans UA159	51.948	73.333	0.381
comYC	Streptococcus suis isolate S10	51.316	72.381	0.371
comGC/cglC	Streptococcus mitis NCTC 12261	51.316	72.381	0.371