Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | RCF73_RS06300 | Genome accession | NZ_CP133240 |
| Coordinates | 1243991..1244965 (+) | Length | 324 a.a. |
| NCBI ID | WP_037573899.1 | Uniprot ID | A0AAE5T169 |
| Organism | Staphylococcus chromogenes strain CCM | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1238991..1249965
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RCF73_RS06265 (RCF73_06230) | rpmG | 1239460..1239609 (+) | 150 | WP_037573919.1 | 50S ribosomal protein L33 | - |
| RCF73_RS06270 (RCF73_06235) | - | 1239805..1240344 (+) | 540 | WP_037573917.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| RCF73_RS06275 (RCF73_06240) | - | 1240362..1241801 (+) | 1440 | WP_107398560.1 | rhomboid family intramembrane serine protease | - |
| RCF73_RS06280 (RCF73_06245) | - | 1241803..1242006 (+) | 204 | WP_037573910.1 | YqgQ family protein | - |
| RCF73_RS06285 (RCF73_06250) | - | 1242003..1242989 (+) | 987 | WP_037573907.1 | ROK family glucokinase | - |
| RCF73_RS06290 (RCF73_06255) | - | 1242990..1243301 (+) | 312 | Protein_1201 | MTH1187 family thiamine-binding protein | - |
| RCF73_RS06295 (RCF73_06260) | - | 1243315..1243938 (+) | 624 | WP_419790397.1 | MBL fold metallo-hydrolase | - |
| RCF73_RS06300 (RCF73_06265) | comGA | 1243991..1244965 (+) | 975 | WP_037573899.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RCF73_RS06305 (RCF73_06270) | - | 1244934..1245587 (+) | 654 | WP_419790398.1 | type II secretion system F family protein | - |
| RCF73_RS06310 (RCF73_06275) | - | 1245600..1246001 (+) | 402 | WP_419791530.1 | type II secretion system F family protein | - |
| RCF73_RS06315 (RCF73_06280) | comGC | 1246016..1246333 (+) | 318 | WP_419790399.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RCF73_RS06320 (RCF73_06285) | comGD | 1246323..1246754 (+) | 432 | WP_051604961.1 | competence type IV pilus minor pilin ComGD | - |
| RCF73_RS06325 (RCF73_06290) | - | 1246859..1247041 (+) | 183 | WP_133172104.1 | hypothetical protein | - |
| RCF73_RS06330 (RCF73_06295) | - | 1247058..1247432 (+) | 375 | WP_107374195.1 | competence type IV pilus minor pilin ComGF | - |
| RCF73_RS06335 (RCF73_06300) | - | 1247597..1248121 (+) | 525 | WP_084276016.1 | shikimate kinase | - |
| RCF73_RS06340 (RCF73_06305) | gcvT | 1248274..1249365 (+) | 1092 | WP_105965325.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37089.84 Da Isoelectric Point: 7.4356
>NTDB_id=872687 RCF73_RS06300 WP_037573899.1 1243991..1244965(+) (comGA) [Staphylococcus chromogenes strain CCM]
MQLLLDHVLQYAITHDASDVHFIPTASQVDVKLRIKDNLKTFDTLNLETYQRILTLLKFKSGLDVSSRHRAQSGRYIYEY
QELYYLRVSTLPLNLGTESCVIRITPQIFQTDKLQTTNDIRKIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEILNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDKQIAKEVTQASLSGHLVLSTIHANDCQGVLL
RLIEMGITKQDLIQSLNMIVNQRLITTKNNDRRLVYETMTSLDIQYFLNHNFTLPDSFKSLSEKLYDLQKEGEIDEQTLR
KYKK
MQLLLDHVLQYAITHDASDVHFIPTASQVDVKLRIKDNLKTFDTLNLETYQRILTLLKFKSGLDVSSRHRAQSGRYIYEY
QELYYLRVSTLPLNLGTESCVIRITPQIFQTDKLQTTNDIRKIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEILNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDKQIAKEVTQASLSGHLVLSTIHANDCQGVLL
RLIEMGITKQDLIQSLNMIVNQRLITTKNNDRRLVYETMTSLDIQYFLNHNFTLPDSFKSLSEKLYDLQKEGEIDEQTLR
KYKK
Nucleotide
Download Length: 975 bp
>NTDB_id=872687 RCF73_RS06300 WP_037573899.1 1243991..1244965(+) (comGA) [Staphylococcus chromogenes strain CCM]
ATGCAGTTATTATTAGACCATGTATTACAGTATGCCATAACCCATGACGCTTCAGATGTCCACTTTATTCCAACCGCTTC
CCAAGTTGATGTAAAATTGAGAATAAAAGATAACTTAAAGACATTTGACACTCTGAATCTAGAGACATACCAAAGAATTT
TAACTTTACTCAAGTTCAAATCAGGTTTAGATGTTTCTTCACGCCATAGAGCTCAAAGTGGGCGATACATCTATGAGTAC
CAAGAACTGTATTATTTGCGTGTTTCTACATTACCACTAAACTTGGGCACTGAAAGTTGTGTAATAAGAATAACGCCGCA
AATATTTCAGACAGACAAACTTCAAACCACTAACGACATTCGTAAAATAATGGAGAAAAAACAAGGACTCATCTTATTTA
GTGGCCCAACAGGAGCTGGTAAAAGTACACTCATGTATCAAATGGTCGTTTATGCTAAAGAAATATTAAATTTAAATATT
ATTACTATAGAAGACCCTGTAGAGCAGCTCGTTAACGGCATTACTCAAATTTCTGTAAATGAAAAAGCAGACATCACATA
TGGTAGTTCTCTTAAAGCTATTTTACGTTGTGATCCTGACGTTATATTAATCGGGGAGATACGAGACAAACAAATTGCCA
AAGAAGTGACGCAAGCAAGTTTAAGTGGACATCTCGTCTTGTCAACGATTCATGCGAATGATTGTCAAGGTGTCTTATTA
AGACTCATTGAAATGGGCATTACCAAACAAGATTTAATACAATCATTAAATATGATCGTTAATCAAAGACTAATCACAAC
TAAAAACAACGATAGAAGATTAGTCTATGAAACCATGACAAGTTTAGACATTCAATACTTTCTAAACCACAATTTTACAT
TGCCAGATTCATTTAAAAGTTTAAGTGAAAAACTTTATGACTTACAAAAGGAAGGGGAGATTGATGAACAAACTTTACGA
AAGTATAAAAAATAA
ATGCAGTTATTATTAGACCATGTATTACAGTATGCCATAACCCATGACGCTTCAGATGTCCACTTTATTCCAACCGCTTC
CCAAGTTGATGTAAAATTGAGAATAAAAGATAACTTAAAGACATTTGACACTCTGAATCTAGAGACATACCAAAGAATTT
TAACTTTACTCAAGTTCAAATCAGGTTTAGATGTTTCTTCACGCCATAGAGCTCAAAGTGGGCGATACATCTATGAGTAC
CAAGAACTGTATTATTTGCGTGTTTCTACATTACCACTAAACTTGGGCACTGAAAGTTGTGTAATAAGAATAACGCCGCA
AATATTTCAGACAGACAAACTTCAAACCACTAACGACATTCGTAAAATAATGGAGAAAAAACAAGGACTCATCTTATTTA
GTGGCCCAACAGGAGCTGGTAAAAGTACACTCATGTATCAAATGGTCGTTTATGCTAAAGAAATATTAAATTTAAATATT
ATTACTATAGAAGACCCTGTAGAGCAGCTCGTTAACGGCATTACTCAAATTTCTGTAAATGAAAAAGCAGACATCACATA
TGGTAGTTCTCTTAAAGCTATTTTACGTTGTGATCCTGACGTTATATTAATCGGGGAGATACGAGACAAACAAATTGCCA
AAGAAGTGACGCAAGCAAGTTTAAGTGGACATCTCGTCTTGTCAACGATTCATGCGAATGATTGTCAAGGTGTCTTATTA
AGACTCATTGAAATGGGCATTACCAAACAAGATTTAATACAATCATTAAATATGATCGTTAATCAAAGACTAATCACAAC
TAAAAACAACGATAGAAGATTAGTCTATGAAACCATGACAAGTTTAGACATTCAATACTTTCTAAACCACAATTTTACAT
TGCCAGATTCATTTAAAAGTTTAAGTGAAAAACTTTATGACTTACAAAAGGAAGGGGAGATTGATGAACAAACTTTACGA
AAGTATAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.204 |
99.691 |
0.58 |
| comGA | Staphylococcus aureus N315 |
58.204 |
99.691 |
0.58 |