Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q9R17_RS04065 Genome accession   NZ_CP133160
Coordinates   915908..917167 (+) Length   419 a.a.
NCBI ID   WP_308157169.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 24(2023)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 910908..922167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9R17_RS04045 (Q9R17_04045) pilR 911255..912628 (+) 1374 WP_308157166.1 sigma-54 dependent transcriptional regulator Regulator
  Q9R17_RS04050 (Q9R17_04050) pilB 912678..914402 (-) 1725 WP_308157167.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q9R17_RS04055 (Q9R17_04055) - 914620..915027 (-) 408 WP_308158271.1 pilin -
  Q9R17_RS04060 (Q9R17_04060) pilA/pilAI 915136..915555 (-) 420 WP_308157168.1 pilin Machinery gene
  Q9R17_RS04065 (Q9R17_04065) pilC 915908..917167 (+) 1260 WP_308157169.1 type II secretion system F family protein Machinery gene
  Q9R17_RS04070 (Q9R17_04070) - 917175..918038 (+) 864 WP_308157170.1 A24 family peptidase -
  Q9R17_RS04075 (Q9R17_04075) coaE 918049..918660 (+) 612 WP_308157171.1 dephospho-CoA kinase -
  Q9R17_RS04080 (Q9R17_04080) - 918718..919395 (-) 678 WP_308157172.1 response regulator transcription factor -
  Q9R17_RS04085 (Q9R17_04085) - 919404..919880 (-) 477 WP_308157173.1 hypothetical protein -
  Q9R17_RS04090 (Q9R17_04090) rimK 920149..921036 (-) 888 WP_308157174.1 30S ribosomal protein S6--L-glutamate ligase -
  Q9R17_RS04095 (Q9R17_04095) - 921143..921340 (-) 198 WP_308157175.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45679.04 Da        Isoelectric Point: 10.1591

>NTDB_id=872148 Q9R17_RS04065 WP_308157169.1 915908..917167(+) (pilC) [Stenotrophomonas sp. 24(2023)]
MSVSRSAIKKEPVARSTTELQPFVWEGTDKRGVKMKGEQVAKNANLLRAELRRQGINPGVVKPKSKPLFGASGSKVTPKD
IAFFSRQMATMMKSGVPIVGALDIIASGHKNPRMKKMVESIKTDIEGGSSLYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVLAVALIVSGILLVWVVPQFEDVFKGFGADLPAFTQMIVNLSRFMVSWWWL
ILLAIVGSIVGFIAAYKRSPRMQHGMDRLVLKLPVMGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
GVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPVIMVIIGTIV
GSMVIGMYLPIFKLAAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=872148 Q9R17_RS04065 WP_308157169.1 915908..917167(+) (pilC) [Stenotrophomonas sp. 24(2023)]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAGGAGCCCGTGGCGCGCAGCACCACGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGGTGGCCAAGAATGCCAACCTGCTCCGGGCCGAGCTGCGCCGCC
AGGGCATCAACCCCGGTGTGGTCAAGCCCAAGTCCAAGCCACTGTTCGGGGCATCTGGCAGCAAGGTCACCCCAAAGGAC
ATTGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCAGGCGTGCCCATCGTCGGCGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGAAAGCATCAAGACCGATATCGAGGGCGGCTCATCGCTGTACGAGG
CGGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTCTACCGCAACCTGGTGCGGGCCGGCGAAGGTGCCGGCGTGCTGGAA
ACGGTGCTGGACACCGTGGCCACCTACAAGGAAAACATCGAAGCACTGAAGGGCAAGATCAAGAAGGCCCTGTTCTACCC
GGCCATGGTGCTGGCCGTGGCGCTGATCGTCAGCGGCATCCTGCTGGTCTGGGTGGTGCCGCAGTTCGAAGACGTGTTCA
AGGGCTTCGGCGCGGACCTGCCCGCCTTCACCCAGATGATCGTCAACCTGTCCCGCTTCATGGTGTCGTGGTGGTGGCTG
ATCCTGCTGGCCATCGTCGGCAGCATTGTCGGCTTCATCGCCGCCTACAAGCGCTCCCCAAGGATGCAGCATGGCATGGA
CCGGCTGGTGCTGAAGCTGCCGGTGATGGGCCAGATCATGCACAACAGCTCCATCGCCCGCTTCGCCCGCACCACGGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAAGCGCTGGGCATCGTCGCCGGCGCCACCGGCAACAAGGTCTACGAGGAA
GGCGTGCTGCGCATGCGCGATGACGTGTCGGTGGGCTACCCGGTCAACATGGCCATGAAGCAGCTCAACCTGTTCCCGCA
CATGGTGATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCCCTGGACGCCATGCTGTTCAAGGTGGCGGAGTACTATG
AGCAGGAAGTCAACAATGCCGTGGATGCCCTGAGCAGCCTGCTGGAACCGGTCATCATGGTGATCATTGGTACCATCGTC
GGCAGCATGGTCATCGGCATGTACCTGCCCATCTTCAAACTTGCCGCCGTTGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.475

96.42

0.506
  pilC Acinetobacter baylyi ADP1

51.724

96.897

0.501
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.511

0.501
  pilC Acinetobacter baumannii D1279779

51.889

94.749

0.492
  pilG Neisseria gonorrhoeae MS11

43.358

95.227

0.413
  pilG Neisseria meningitidis 44/76-A

42.857

95.227

0.408
  pilC Vibrio cholerae strain A1552

41.133

96.897

0.399
  pilC Vibrio campbellii strain DS40M4

40.399

95.704

0.387