Detailed information NTG0872145

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: Q9R17_RS04045
• Genome accession: NZ_CP133160
• Coordinates: 911255..912628 (+)
• Length: 457 a.a.
• NCBI ID: WP_308157166.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. 24(2023)
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 906255..917628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9R17_RS04030 (Q9R17_04030)	sucD	907173..908048 (-)	876	WP_308157164.1	succinate--CoA ligase subunit alpha	-
Q9R17_RS04035 (Q9R17_04035)	sucC	908070..909239 (-)	1170	WP_125362066.1	ADP-forming succinate--CoA ligase subunit beta	-
Q9R17_RS04040 (Q9R17_04040)	-	909580..911193 (+)	1614	WP_308157165.1	ATP-binding protein	-
Q9R17_RS04045 (Q9R17_04045)	pilR	911255..912628 (+)	1374	WP_308157166.1	sigma-54 dependent transcriptional regulator	Regulator
Q9R17_RS04050 (Q9R17_04050)	pilB	912678..914402 (-)	1725	WP_308157167.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q9R17_RS04055 (Q9R17_04055)	-	914620..915027 (-)	408	WP_308158271.1	pilin	-
Q9R17_RS04060 (Q9R17_04060)	pilA/pilAI	915136..915555 (-)	420	WP_308157168.1	pilin	Machinery gene
Q9R17_RS04065 (Q9R17_04065)	pilC	915908..917167 (+)	1260	WP_308157169.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49481.80 Da
• Isoelectric Point: 6.3574

>NTDB_id=872145 Q9R17_RS04045 WP_308157166.1 911255..912628(+) (pilR) [Stenotrophomonas sp. 24(2023)]
MNDTRSALIVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHFPHTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNAERRVAAPTSDEGGRLLGDSAAMAQLRGTIAKVARS
QAPVYILGESGVGKELVARTIHSQSARAAGPFIPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAANGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRSVGAAQEEPVDVRILSATHRDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPA
LAAAILARLARSHGRPTPLLAPSALDALAQYGFPGNVRELENILERALALAEEDCIGIDDLRLPQHAPRAPGAAAPPEAV
ADLPASGAALPSYIEQMERTAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=872145 Q9R17_RS04045 WP_308157166.1 911255..912628(+) (pilR) [Stenotrophomonas sp. 24(2023)]
ATGAACGACACCCGCAGCGCACTGATCGTCGACGACGAGCGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAATCTCGCCGAAGCCCGCGAGCTGCTGGCCAGCAACCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCAGTGAGATCGCCCAGCACTTCCCGCATACCCCCGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAAGCCCTGAAGGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGCGGTCTGGTCAAGCACGCGCTGGAACTCAACAATGCCGAACGCCGCGTGGCGGCGCCGACCA
GCGATGAAGGTGGCCGCCTGCTGGGTGATTCGGCGGCGATGGCACAGCTGCGCGGCACCATCGCCAAGGTGGCCCGAAGC
CAGGCCCCGGTCTACATCCTGGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCACGCACCATCCACAGCCAGAGCGCGCG
CGCGGCCGGCCCGTTCATTCCCGTCAACTGCGGGGCCATCCCCGGCGAGCTGATGGAAAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCAGTGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTGGATGAA
GTGGCCGAACTGCCCCTGCAGATGCAGGTGAAGCTGCTGCGTGCCATCCAGGAAAAATCGGTACGGTCGGTCGGTGCCGC
GCAGGAAGAACCGGTGGACGTGCGCATCCTGTCGGCCACCCATCGTGACCTGGCCGAGCTGGTCGAGGATGGCCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTCATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGCC
CTGGCCGCCGCGATCCTGGCACGGCTGGCGCGCAGCCATGGCCGTCCCACCCCGCTGCTGGCCCCTTCCGCGCTGGACGC
GCTGGCCCAGTACGGCTTCCCCGGCAACGTGCGTGAACTGGAGAACATTCTCGAGCGCGCCCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCATCGACGACCTGCGGCTGCCACAGCACGCACCGCGCGCACCGGGCGCTGCGGCACCGCCGGAAGCCGTG
GCCGACCTGCCTGCCAGCGGCGCGGCCCTGCCGTCGTACATCGAGCAGATGGAACGCACCGCGATCCAGCGCGCGCTGGA
GGAAAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGGGCGCTGCGCTACAAGCTGAAGAAGC
TGGGCATGGAATGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.135	99.125	0.626
pilR	Acinetobacter baumannii strain A118	48.918	100	0.495
luxO	Vibrio cholerae strain A1552	36.889	98.468	0.363