Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RBH93_RS01965 Genome accession   NZ_CP133079
Coordinates   399691..400932 (-) Length   413 a.a.
NCBI ID   WP_076361971.1    Uniprot ID   -
Organism   Aeromonas veronii strain HS1906     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 394691..405932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH93_RS01940 (RBH93_01940) mutT 396730..397143 (+) 414 WP_307896090.1 8-oxo-dGTP diphosphatase MutT -
  RBH93_RS01945 (RBH93_01945) yacG 397204..397398 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  RBH93_RS01950 (RBH93_01950) zapD 397408..398130 (-) 723 WP_024945431.1 cell division protein ZapD -
  RBH93_RS01955 (RBH93_01955) coaE 398168..398782 (-) 615 WP_307896092.1 dephospho-CoA kinase -
  RBH93_RS01960 (RBH93_01960) pilD 398796..399668 (-) 873 WP_307896093.1 A24 family peptidase Machinery gene
  RBH93_RS01965 (RBH93_01965) pilC 399691..400932 (-) 1242 WP_076361971.1 type II secretion system F family protein Machinery gene
  RBH93_RS01970 (RBH93_01970) pilB 401048..402754 (-) 1707 WP_307896095.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  RBH93_RS01975 (RBH93_01975) - 402758..403234 (-) 477 WP_307896097.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  RBH93_RS01980 (RBH93_01980) nadC 403550..404425 (-) 876 WP_307896099.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RBH93_RS01985 (RBH93_01985) - 404431..404901 (-) 471 WP_024944772.1 TIGR02281 family clan AA aspartic protease -
  RBH93_RS01990 (RBH93_01990) ampD 405048..405617 (+) 570 WP_307896101.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45479.63 Da        Isoelectric Point: 9.8637

>NTDB_id=871658 RBH93_RS01965 WP_076361971.1 399691..400932(-) (pilC) [Aeromonas veronii strain HS1906]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVNKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LAIFLYVRAWRTSQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=871658 RBH93_RS01965 WP_076361971.1 399691..400932(-) (pilC) [Aeromonas veronii strain HS1906]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAACAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCCCGT
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGTGAGCTCATGGGCCAGATTGCCGCCGATGTGGAGACCGGCACCCCCATGTCCGAAGCGCTGCGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAATCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCTACCTATCGCGAGAAATCGGAAGCCCTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATCGTCGTCACCTCCATCCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGACATCTTCAAGAGCTTCGGCGCCGAGC
TGCCCATCTTCACCCAATTTGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTATGTGATCTTTGGCGGCATAGCG
CTTGCCATCTTTCTCTACGTGCGCGCCTGGCGCACCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCATACTGACCAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCACGTTTCGCCCGCACCCTCTCCACCACCTTCTCCGCCGGCA
TCCCGCTGGTAGATGCTCTGGTCTCTGCGGCAGGCGCCTCCGGCAACTATGTCTACCGCACTGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCAATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTAGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGATCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

47.739

96.368

0.46
  pilC Vibrio campbellii strain DS40M4

46.348

96.126

0.446
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368