NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	RBH93_RS01960	Genome accession	NZ_CP133079
Coordinates	398796..399668 (-)	Length	290 a.a.
NCBI ID	WP_307896093.1	Uniprot ID	-
Organism	Aeromonas veronii strain HS1906
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 393796..404668

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBH93_RS01935 (RBH93_01935)	secA	393935..396655 (+)	2721	WP_005336144.1	preprotein translocase subunit SecA	-
RBH93_RS01940 (RBH93_01940)	mutT	396730..397143 (+)	414	WP_307896090.1	8-oxo-dGTP diphosphatase MutT	-
RBH93_RS01945 (RBH93_01945)	yacG	397204..397398 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
RBH93_RS01950 (RBH93_01950)	zapD	397408..398130 (-)	723	WP_024945431.1	cell division protein ZapD	-
RBH93_RS01955 (RBH93_01955)	coaE	398168..398782 (-)	615	WP_307896092.1	dephospho-CoA kinase	-
RBH93_RS01960 (RBH93_01960)	pilD	398796..399668 (-)	873	WP_307896093.1	A24 family peptidase	Machinery gene
RBH93_RS01965 (RBH93_01965)	pilC	399691..400932 (-)	1242	WP_076361971.1	type II secretion system F family protein	Machinery gene
RBH93_RS01970 (RBH93_01970)	pilB	401048..402754 (-)	1707	WP_307896095.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
RBH93_RS01975 (RBH93_01975)	-	402758..403234 (-)	477	WP_307896097.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
RBH93_RS01980 (RBH93_01980)	nadC	403550..404425 (-)	876	WP_307896099.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32389.71 Da Isoelectric Point: 6.7409

                                >NTDB_id=871657 RBH93_RS01960 WP_307896093.1 398796..399668(-) (pilD) [Aeromonas veronii strain HS1906]

MLIITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA

ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATYPPGWALLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLTGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL

VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=871657 RBH93_RS01960 WP_307896093.1 398796..399668(-) (pilD) [Aeromonas veronii strain HS1906]

ATGTTGATTATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG

CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA

ATCCGGAAACACAGCCTCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGCTCTGCCTGCCCCCATTGCGGCCACGCC

ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC

GGCCCGTTATCCTCTGGTAGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATACCCACCGGGCTGGGCCT

TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG

CTGACCCTGCCACTGCTGTGGGGCGGTCTGCTGTTCAATCTGACAGGGGGATTTGTACCGCTGGCCGATGCGGTGATCGG

TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG

GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCATCCCTG

GTCGGCGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT

CGCCATCGCCGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.563	97.931	0.593
pilD	Vibrio campbellii strain DS40M4	55.944	98.621	0.552
pilD	Acinetobacter baumannii D1279779	53.521	97.931	0.524
pilD	Acinetobacter nosocomialis M2	53.521	97.931	0.524
pilD	Neisseria gonorrhoeae MS11	50	91.724	0.459

Detailed information NTG0871657