Detailed information NTG0870600

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: RA164_RS14825
• Genome accession: NZ_CP132911
• Coordinates: 3321318..3322442 (+)
• Length: 374 a.a.
• NCBI ID: WP_329741607.1
• Uniprot ID: -
• Organism: Dyella aluminiiresistens strain A6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3316318..3327442

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA164_RS14805	-	3317785..3319155 (-)	1371	WP_329741603.1	pyridoxal-phosphate dependent enzyme	-
RA164_RS14810	-	3319333..3319560 (-)	228	WP_329741604.1	YdcH family protein	-
RA164_RS14815	-	3319851..3320513 (-)	663	WP_329741605.1	hypothetical protein	-
RA164_RS14820	-	3320510..3321235 (-)	726	WP_329741606.1	DUF4398 domain-containing protein	-
RA164_RS14825	pilU	3321318..3322442 (+)	1125	WP_329741607.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
RA164_RS14830	maiA	3322499..3323167 (-)	669	WP_329741608.1	maleylacetoacetate isomerase	-
RA164_RS14835	-	3323302..3324462 (+)	1161	WP_412731113.1	phosphoglycerate kinase	-
RA164_RS14840	-	3324468..3325103 (+)	636	WP_329741610.1	HAD hydrolase-like protein	-
RA164_RS14845	-	3325357..3326064 (+)	708	WP_329741611.1	FadR/GntR family transcriptional regulator	-
RA164_RS14850	-	3326070..3327002 (+)	933	WP_329741612.1	2-dehydro-3-deoxygalactonokinase	-

Sequence

Protein

• Length: 374 a.a.
• Molecular weight: 41382.66 Da
• Isoelectric Point: 6.2489

>NTDB_id=870600 RA164_RS14825 WP_329741607.1 3321318..3322442(+) (pilU) [Dyella aluminiiresistens strain A6]
MDIGYFLKLMVDKGASDMFLSTGAPVNIKVEGKLYPLGNTGLPSGMVKKIAYSLMDEGQVPQFERDLELNIALAVKEAGR
FRINVFKQRGEVGMVIRAIKSEIPNIDQLQLPSIFRELIMEPRGLILVVGATGSGKSTTLAAMLDHRNSNSPGHILTIED
PIEYLHRHKRSIVNQREVGLDTHSYHEALKNAMREAPDVIMIGEIRDTDTMEAAIAFSETGHLCLATLHSNNADQTLERI
LNFFPESAHKNVLMNLALNLKAVISQRLVIGKDGRRLPAVEVLLNTPMIRDMIRRGQVQDIKEAMDRSLQEGMQTFDQSL
YKLYKTGRIELDEALAKADSRDGLSLKVRLAEGGGNEAAGADVELSNDPYGMGF

Nucleotide

• Length: 1125 bp

>NTDB_id=870600 RA164_RS14825 WP_329741607.1 3321318..3322442(+) (pilU) [Dyella aluminiiresistens strain A6]
GTGGATATCGGTTACTTCCTCAAACTGATGGTCGACAAGGGCGCTTCGGACATGTTCCTGTCCACCGGCGCGCCCGTGAA
CATCAAGGTCGAGGGCAAGCTCTACCCGCTGGGAAATACCGGCCTGCCCAGCGGCATGGTGAAGAAAATCGCGTATTCGC
TGATGGACGAAGGGCAGGTTCCGCAATTCGAACGTGACCTGGAACTGAACATTGCACTGGCGGTGAAAGAAGCTGGCCGC
TTCCGCATCAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTGATCCGCGCCATCAAGAGCGAGATCCCCAACATCGA
CCAGTTGCAGCTGCCCAGCATCTTCCGCGAGCTGATCATGGAGCCGCGCGGGCTGATCCTGGTGGTCGGCGCCACCGGCT
CGGGCAAGTCCACCACCCTGGCGGCGATGCTCGACCACCGCAACTCCAATTCGCCCGGGCACATCCTCACCATCGAGGAC
CCGATCGAATACCTGCACCGGCACAAGCGCTCCATCGTCAACCAGCGCGAAGTGGGGCTGGACACGCACAGCTATCACGA
GGCGCTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCATGATCGGCGAGATCCGCGACACCGACACGATGGAGGCGG
CGATCGCCTTCTCCGAGACGGGCCACCTGTGCCTGGCCACGCTGCATTCCAACAATGCCGACCAGACGCTGGAACGCATC
CTCAACTTCTTCCCCGAGTCGGCACACAAGAACGTGCTGATGAACCTGGCCCTGAACCTGAAGGCCGTGATCAGCCAGCG
CCTGGTGATCGGCAAGGACGGACGTCGCCTGCCGGCGGTCGAAGTGCTGCTGAACACGCCGATGATCCGCGACATGATCC
GTCGCGGCCAGGTGCAGGACATCAAGGAAGCGATGGACCGCAGCCTGCAGGAAGGCATGCAGACCTTCGACCAGTCGCTG
TACAAGCTGTACAAGACCGGCCGCATCGAGCTGGACGAAGCGCTCGCCAAGGCCGACTCGCGCGACGGCCTGTCACTGAA
GGTGCGCCTGGCCGAAGGCGGCGGCAACGAAGCAGCCGGCGCCGACGTGGAATTGAGCAACGACCCCTACGGCATGGGGT
TCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (47-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	48.684	100	0.495
pilU	Acinetobacter baylyi ADP1	50	94.652	0.473
pilU	Vibrio cholerae strain A1552	49.153	94.652	0.465
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.838	90.642	0.406
pilT	Acinetobacter baylyi ADP1	42.353	90.909	0.385
pilT	Acinetobacter nosocomialis M2	41.716	90.374	0.377
pilT	Acinetobacter baumannii D1279779	41.716	90.374	0.377
pilT	Acinetobacter baumannii strain A118	41.716	90.374	0.377
pilT	Pseudomonas stutzeri DSM 10701	41.716	90.374	0.377
pilT	Pseudomonas aeruginosa PAK	41.42	90.374	0.374