Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RA164_RS02925 Genome accession   NZ_CP132911
Coordinates   708975..710243 (-) Length   422 a.a.
NCBI ID   WP_329742482.1    Uniprot ID   -
Organism   Dyella aluminiiresistens strain A6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 703975..715243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA164_RS02900 - 704211..704906 (-) 696 WP_329742477.1 TVP38/TMEM64 family protein -
  RA164_RS02905 - 704903..705466 (-) 564 WP_329742478.1 nucleoside deaminase -
  RA164_RS02910 - 705471..707228 (-) 1758 WP_329742479.1 glutamine--tRNA ligase/YqeY domain fusion protein -
  RA164_RS02915 coaE 707370..707990 (-) 621 WP_329742480.1 dephospho-CoA kinase -
  RA164_RS02920 pilD 707987..708853 (-) 867 WP_329742481.1 A24 family peptidase Machinery gene
  RA164_RS02925 pilC 708975..710243 (-) 1269 WP_329742482.1 type II secretion system F family protein Machinery gene
  RA164_RS02930 pilB 710423..712144 (-) 1722 WP_329742483.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RA164_RS02935 - 712417..713271 (+) 855 WP_329742484.1 glycosyltransferase family 2 protein -
  RA164_RS02940 - 713264..714457 (+) 1194 WP_329742485.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45971.02 Da        Isoelectric Point: 10.3711

>NTDB_id=870585 RA164_RS02925 WP_329742482.1 708975..710243(-) (pilC) [Dyella aluminiiresistens strain A6]
MATASATANNARTVGAQRAQVSQLTTYDWVALDKRGKQMKGSMPAKNASLVKAELRRQGMNPQTVREQPKPLFGSTGKTV
TPGDVAIFSRQIATMMASGVPMVQSFDIIADGQKNPRFKNILTDVKMGIEGGQSLHEALGRYPVQFDELYRNLVRAGESA
GVLDTVLDTVATYKERTEALKKKIKKALFYPISVLAVAMLVSMIMLIFVVPVFAKTFQSAGAALPAPTQIVVSASRFMQH
YWWLIILIIVATVVGFGMAKRRSVKFAHFLDRLTLRLPVIGNIMRQSAIARFARTLGVTFRAGVPLVEALDAVSGATGSV
VYGDAVKQMRDDIAVGHQLQLAMRQTNLFPNMVVQMTGIGEESGALDSMLFKVAEFYEDEVNNAVDTLSTLLEPMIMVIL
GVIVGGMVISLYLPIFKLAGTF

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=870585 RA164_RS02925 WP_329742482.1 708975..710243(-) (pilC) [Dyella aluminiiresistens strain A6]
ATGGCCACGGCTAGCGCCACCGCAAACAACGCTCGTACTGTCGGCGCCCAGAGGGCCCAGGTCAGTCAGCTGACCACCTA
CGACTGGGTCGCGCTGGACAAGCGCGGCAAGCAGATGAAGGGCTCCATGCCGGCGAAGAACGCCTCGCTGGTCAAGGCCG
AGCTGCGCCGCCAGGGCATGAATCCGCAGACCGTGCGCGAGCAGCCCAAGCCGCTGTTCGGCTCCACCGGCAAAACGGTC
ACGCCCGGCGACGTGGCGATCTTCAGCCGCCAGATCGCCACCATGATGGCGTCCGGCGTACCGATGGTGCAGTCGTTCGA
CATCATCGCCGACGGCCAGAAGAACCCCCGCTTCAAGAACATCCTCACCGACGTGAAGATGGGCATCGAGGGCGGTCAGT
CGCTGCATGAGGCGCTGGGCCGCTACCCGGTCCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAGTCGGCC
GGTGTGCTCGACACGGTGCTGGACACGGTCGCCACCTACAAGGAACGCACCGAGGCGCTGAAGAAGAAGATCAAGAAGGC
ACTGTTCTACCCGATCAGCGTGCTGGCTGTGGCCATGCTGGTCAGCATGATCATGCTGATCTTCGTGGTGCCCGTGTTTG
CCAAGACCTTCCAGAGCGCCGGCGCCGCATTGCCCGCCCCGACCCAGATCGTGGTCAGTGCCTCGCGGTTCATGCAGCAC
TACTGGTGGTTGATCATTCTCATCATCGTCGCCACGGTCGTCGGTTTCGGCATGGCCAAGCGACGCTCGGTGAAATTCGC
GCATTTCCTCGACCGCCTGACGCTGAGGCTGCCGGTCATCGGCAACATTATGCGCCAGTCGGCCATCGCCCGCTTCGCAC
GCACCCTGGGTGTCACCTTCCGCGCCGGTGTGCCGCTGGTCGAGGCGCTGGATGCCGTGTCCGGCGCAACCGGCAGCGTA
GTCTATGGCGATGCCGTGAAGCAGATGCGTGACGACATCGCGGTGGGTCACCAGCTGCAGCTGGCGATGCGCCAGACCAA
TCTGTTCCCCAACATGGTGGTGCAGATGACCGGTATCGGCGAGGAATCCGGCGCCCTGGACAGCATGCTGTTCAAGGTGG
CCGAGTTCTACGAGGACGAGGTCAACAATGCCGTCGACACCCTGTCCACCCTGCTGGAACCGATGATCATGGTGATCCTG
GGCGTCATAGTGGGCGGCATGGTGATCTCGCTGTACTTGCCGATCTTCAAGCTCGCCGGTACGTTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.165

93.602

0.498
  pilC Pseudomonas stutzeri DSM 10701

52.03

93.365

0.486
  pilC Acinetobacter baumannii D1279779

50.124

95.498

0.479
  pilC Acinetobacter baylyi ADP1

49.507

96.209

0.476
  pilG Neisseria gonorrhoeae MS11

42.298

90.758

0.384
  pilG Neisseria meningitidis 44/76-A

42.037

90.758

0.382
  pilC Vibrio campbellii strain DS40M4

39.394

93.839

0.37
  pilC Vibrio cholerae strain A1552

38.596

94.55

0.365
  pilC Thermus thermophilus HB27

36.603

99.052

0.363