Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RA164_RS02920 Genome accession   NZ_CP132911
Coordinates   707987..708853 (-) Length   288 a.a.
NCBI ID   WP_329742481.1    Uniprot ID   -
Organism   Dyella aluminiiresistens strain A6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 702987..713853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA164_RS02900 - 704211..704906 (-) 696 WP_329742477.1 TVP38/TMEM64 family protein -
  RA164_RS02905 - 704903..705466 (-) 564 WP_329742478.1 nucleoside deaminase -
  RA164_RS02910 - 705471..707228 (-) 1758 WP_329742479.1 glutamine--tRNA ligase/YqeY domain fusion protein -
  RA164_RS02915 coaE 707370..707990 (-) 621 WP_329742480.1 dephospho-CoA kinase -
  RA164_RS02920 pilD 707987..708853 (-) 867 WP_329742481.1 A24 family peptidase Machinery gene
  RA164_RS02925 pilC 708975..710243 (-) 1269 WP_329742482.1 type II secretion system F family protein Machinery gene
  RA164_RS02930 pilB 710423..712144 (-) 1722 WP_329742483.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RA164_RS02935 - 712417..713271 (+) 855 WP_329742484.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31676.89 Da        Isoelectric Point: 8.8038

>NTDB_id=870584 RA164_RS02920 WP_329742481.1 707987..708853(-) (pilD) [Dyella aluminiiresistens strain A6]
MPDLPPYAWTLAAALLGLVVGSFLNVVILRLPERMEAQWKRDARDLLEPDAEREPAPPLPPGIVREPSHCPHCKHPLSAA
DNIPLFGWLLLRGRCRYCKTAISIQYPLVELMTAVLSAVVVWKFGASWAALSGLLLTWSLVALAGIDFRTQLLPDQITLP
LLWLGLLLALLPMFVNAHMAILGAAIGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGPWSLLPIILLSSLIGAL
VGGSLIALRRHQREIPIPFGPFIAAAGWVWFVAGPQLLHAYMHFAGMR

Nucleotide


Download         Length: 867 bp        

>NTDB_id=870584 RA164_RS02920 WP_329742481.1 707987..708853(-) (pilD) [Dyella aluminiiresistens strain A6]
ATGCCCGATCTGCCTCCTTACGCGTGGACGCTCGCCGCCGCCCTGCTCGGTCTAGTGGTGGGAAGCTTCCTGAATGTGGT
GATCCTGCGCCTTCCCGAACGCATGGAGGCCCAGTGGAAGCGCGACGCCCGCGACCTGCTGGAACCCGACGCCGAGCGGG
AGCCTGCACCGCCCCTGCCGCCCGGCATCGTGCGCGAGCCTTCGCACTGCCCGCACTGCAAGCACCCGCTGTCGGCCGCC
GACAACATTCCGCTGTTCGGCTGGCTGCTGCTCCGTGGCCGATGCCGCTACTGCAAGACCGCCATCTCGATCCAGTACCC
GCTGGTCGAACTGATGACGGCCGTGCTCAGCGCAGTCGTGGTGTGGAAATTCGGCGCCAGCTGGGCTGCGCTGTCCGGTC
TGCTGCTCACCTGGTCGCTGGTCGCGCTGGCCGGCATCGATTTCCGCACCCAGCTGCTGCCTGATCAGATCACCCTGCCG
CTGCTGTGGCTCGGCCTGCTGCTTGCTCTGCTGCCGATGTTCGTGAACGCGCACATGGCGATTCTGGGAGCCGCGATCGG
TTATCTCAGCCTGTGGAGCGTGTACTGGCTGTTCAAACTGCTCACCGGCAAGGAGGGCATGGGCTACGGCGATTTCAAGC
TGCTCGCTGCATTGGGCGCCTGGCTGGGACCGTGGAGCCTGTTGCCGATCATCCTGCTGTCGTCCCTAATCGGCGCCCTG
GTTGGCGGCAGCCTGATCGCATTGCGCCGGCACCAGCGCGAGATACCCATTCCGTTCGGTCCGTTCATCGCCGCCGCCGG
CTGGGTCTGGTTCGTGGCGGGCCCGCAGTTGCTGCATGCCTACATGCATTTCGCCGGGATGCGATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-242)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50.534

97.569

0.493
  pilD Acinetobacter baumannii D1279779

50.362

95.833

0.483
  pilD Acinetobacter nosocomialis M2

50.545

95.486

0.483
  pilD Vibrio campbellii strain DS40M4

48.561

96.528

0.469
  pilD Neisseria gonorrhoeae MS11

47.482

96.528

0.458