Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RAL92_RS05585 Genome accession   NZ_CP132337
Coordinates   1185313..1186530 (-) Length   405 a.a.
NCBI ID   WP_346841809.1    Uniprot ID   -
Organism   Pseudomonas otitidis strain Tg_9B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1180313..1191530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL92_RS05540 (RAL92_05545) - 1180717..1180890 (-) 174 WP_044406847.1 DUF3094 family protein -
  RAL92_RS05545 (RAL92_05550) - 1180970..1181596 (-) 627 WP_044406964.1 DUF1780 domain-containing protein -
  RAL92_RS05550 (RAL92_05555) - 1181716..1182141 (+) 426 WP_044406849.1 GNAT family N-acetyltransferase -
  RAL92_RS05555 (RAL92_05560) - 1182138..1182614 (+) 477 WP_052807598.1 hypothetical protein -
  RAL92_RS05560 (RAL92_05565) - 1182611..1183297 (+) 687 WP_142011982.1 energy-coupling factor ABC transporter permease -
  RAL92_RS05565 (RAL92_05570) - 1183408..1183623 (+) 216 WP_160481384.1 hypothetical protein -
  RAL92_RS05570 (RAL92_05575) yacG 1183636..1183833 (-) 198 WP_044406857.1 DNA gyrase inhibitor YacG -
  RAL92_RS05575 (RAL92_05580) coaE 1183830..1184441 (-) 612 WP_346841808.1 dephospho-CoA kinase -
  RAL92_RS05580 (RAL92_05585) pilD 1184438..1185310 (-) 873 WP_253123383.1 A24 family peptidase Machinery gene
  RAL92_RS05585 (RAL92_05590) pilC 1185313..1186530 (-) 1218 WP_346841809.1 type II secretion system F family protein Machinery gene
  RAL92_RS05590 (RAL92_05595) pilB 1186534..1188237 (-) 1704 WP_346841810.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RAL92_RS05595 (RAL92_05600) - 1188462..1188962 (+) 501 WP_346841811.1 pilin -
  RAL92_RS05600 (RAL92_05605) - 1189075..1190742 (+) 1668 WP_346841812.1 Wzy polymerase domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44275.17 Da        Isoelectric Point: 9.8022

>NTDB_id=868211 RAL92_RS05585 WP_346841809.1 1185313..1186530(-) (pilC) [Pseudomonas otitidis strain Tg_9B]
MAEKAVKTSVFKWEGTDKKGTKVTGELIGINPSLIKAQLRKQGINPLKVRKKTTSLFSSGKKIKPLDIALFTRQMATMMK
SGVPLLQSFDIIGEGFDNANMRKLVDEVKQDVAAGNSFAASLRKRPAYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKSKIKKAMNYPIAVILVAVIVSAILLIKVVPQFQSVFANFGAELPAFTLMVIGLSETLQEWWYIIIFVLFGAFFGLK
QTHQRSEPFRNWLDKFVLKLPIVGDILYKAVVARFARTLATTFAAGVPLVEALDSVAGATGNIVFKNAVAKIKQDVSSGM
QLNFSMRTAGVFPTMAVQMTAIGEESGSLDLMLDKVATYYEQEVDNAVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=868211 RAL92_RS05585 WP_346841809.1 1185313..1186530(-) (pilC) [Pseudomonas otitidis strain Tg_9B]
ATGGCGGAAAAAGCAGTTAAAACGAGTGTTTTCAAGTGGGAAGGCACTGATAAAAAAGGAACCAAGGTCACAGGTGAGCT
CATTGGTATCAACCCTTCGCTGATCAAGGCTCAACTTCGAAAGCAAGGCATCAATCCGCTCAAGGTAAGAAAAAAGACTA
CGTCGCTCTTCAGTTCGGGGAAAAAGATCAAGCCTCTGGATATTGCGCTTTTTACTCGCCAGATGGCTACTATGATGAAG
TCCGGCGTCCCCCTTCTACAATCCTTTGATATTATTGGCGAAGGATTTGACAACGCAAACATGCGTAAGCTTGTTGATGA
AGTTAAGCAGGATGTTGCGGCAGGCAATAGCTTCGCAGCGTCCCTTCGAAAACGGCCAGCTTACTTTGATGATCTCTATT
GCAACCTTGTCGACTCAGGCGAACAGTCTGGCGCACTTGAAACCCTTCTTGACCGAGTCGCCACTTACAAAGAGAAGACT
GAGGCTCTAAAATCCAAAATCAAAAAAGCGATGAACTATCCTATTGCGGTAATTCTAGTCGCAGTCATAGTCTCTGCCAT
CTTGCTAATAAAGGTTGTCCCGCAATTTCAATCCGTTTTTGCGAATTTTGGCGCAGAGCTACCCGCCTTCACATTGATGG
TCATCGGCCTATCCGAAACCCTGCAAGAATGGTGGTATATAATAATTTTTGTACTTTTCGGGGCCTTCTTCGGCCTCAAG
CAGACTCACCAACGCTCTGAGCCATTCCGTAACTGGCTAGACAAATTCGTCCTCAAGCTCCCCATTGTGGGTGACATACT
CTACAAGGCTGTAGTTGCTCGTTTCGCAAGGACACTCGCCACCACCTTTGCTGCGGGAGTTCCATTAGTTGAAGCTCTAG
ACTCCGTCGCGGGTGCTACTGGCAACATTGTATTCAAGAATGCAGTCGCAAAAATCAAGCAGGATGTTTCATCCGGCATG
CAATTGAATTTCTCCATGCGCACCGCTGGTGTATTCCCAACTATGGCGGTGCAAATGACTGCAATCGGCGAAGAATCGGG
CTCACTGGACCTGATGCTTGACAAAGTTGCCACGTATTATGAACAGGAAGTAGACAATGCGGTAGATGGACTAACTGCCT
TGATGGAACCCATGATTATGGCTGTGCTAGGTGTATTGGTCGGTGGCTTGATCATCGCCATGTACCTCCCTATCTTCCAA
CTCGGCTCTGTAGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

81.481

100

0.815
  pilC Acinetobacter baylyi ADP1

60.099

100

0.602
  pilC Acinetobacter baumannii D1279779

59.012

100

0.59
  pilC Legionella pneumophila strain ERS1305867

53.535

97.778

0.523
  pilG Neisseria gonorrhoeae MS11

44.03

99.259

0.437
  pilG Neisseria meningitidis 44/76-A

43.781

99.259

0.435
  pilC Vibrio cholerae strain A1552

42.424

97.778

0.415
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402
  pilC Thermus thermophilus HB27

36.409

99.012

0.36